Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway

The ancient reductive acetyl-CoA pathway is employed by acetogenic bacteria to form acetate from inorganic energy sources. Since the central pathway does not gain net ATP by substrate-level phosphorylation, chemolithoautotrophic growth relies on the additional formation of ATP via a chemiosmotic mechanism. Genome analyses indicated that some acetogens only have an energy-converting, ion-translocating hydrogenase (Ech) as a potential respiratory enzyme. Although the Ech-encoding genes are widely distributed in nature, the proposed function of Ech as an ion-translocating chemiosmotic coupling site has neither been demonstrated in bacteria nor has it been demonstrated that it can be the only energetic coupling sites in microorganisms that depend on a chemiosmotic mechanism for energy conservation. Here, we show that the Ech complex of the thermophilic acetogenic bacteriumThermoanaerobacter kivuiis indeed a respiratory enzyme. Experiments with resting cells prepared fromT. kivuicultures grown on carbon monoxide (CO) revealed CO oxidation coupled to H2formation and the generation of a transmembrane electrochemical ion gradient (Δµ∼ion). Inverted membrane vesicles (IMVs) prepared from CO-grown cells also produced H2and ATP from CO (via a loosely attached CO dehydrogenase) or a chemical reductant. Finally, we show that Ech activity led to the translocation of both H+and Na+across the membrane of the IMVs. The H+gradient was then used by the ATP synthase for energy conservation. These data demonstrate that the energy-converting hydrogenase in concert with an ATP synthase may be the simplest form of respiration; it combines carbon dioxide fixation with the synthesis of ATP in an ancient pathway.

Chemiosmotic coupling in oxidative phosphorylation: The history of a hard experimental effort hampered by the Heisenberg indeterminacy principle

Understanding how biological systems convert and store energy is a primary goal of biological research. However, despite the formulation of Mitchell’s chemiosmotic theory, which allowed taking fundamental steps forward, we are still far from the complete decryption of basic processes as oxidative phosphorylation (OXPHOS) and photosynthesis. After more than half a century, the chemiosmotic theory appears to need updating, as some of its assumptions have proven incorrect in the light of the latest structural data on respiratory chain complexes, bacteriorhodopsin and proton pumps. Moreover, the existence of an OXPHOS on the plasma membrane of cells casts doubt on the possibility to build up a transversal proton gradient across it, while paving the way for important applications in the field of neurochemistry and oncology. Up-to date biotechnologies, such as fluorescence indicators can follow proton displacement and sinks, and a number of reports have elegantly demonstrated that proton translocation is lateral rather than transversal with respect to the coupling membrane. Furthermore, the definition of the physical species involved in the transfer (proton, hydroxonium ion or proton currents) is still unresolved even though the latest acquisitions support the idea that protonic currents, difficult to measure, are involved. It seems that the concept of diffusion of the proton expressed more than two centuries ago by Theodor von Grotthuss, is decisive for overcoming these issues. All these uncertainties remember us that also in biology it is necessary to take into account the Heisenberg indeterminacy principle, that sets limits to analytical questions.

Chemiosmotic coupling in oxidative phosphorylation: The history of a hard experimental effort hampered by the Heisenberg indeterminacy principle

Understanding how biological systems convert and store energy is a primary goal of biological research. However, despite the formulation of Mitchell’s chemiosmotic theory, which allowed taking fundamental steps forward, we are still far from the complete decryption of basic processes as oxidative phosphorylation (OXPHOS) and photosynthesis. After more than half a century, the chemiosmotic theory appears to need updating, as some of its assumptions have proven incorrect in the light of the latest structural data on respiratory chain complexes, bacteriorhodopsin and proton pumps. Moreover, the existence of an OXPHOS on the plasma membrane of cells casts doubt on the possibility to build up a transversal proton gradient across it, while paving the way for important applications in the field of neurochemistry and oncology. Up-to date biotechnologies, such as fluorescence indicators can follow proton displacement and sinks, and a number of reports have elegantly demonstrated that proton translocation is lateral rather than transversal with respect to the coupling membrane. Furthermore, the definition of the physical species involved in the transfer (proton, hydroxonium ion or proton currents) is still unresolved even though the latest acquisitions support the idea that protonic currents, difficult to measure, are involved. It seems that the concept of diffusion of the proton expressed more than two centuries ago by Theodor von Grotthuss, is decisive for overcoming these issues. All these uncertainties remember us that also in biology it is necessary to take into account the Heisenberg indeterminacy principle, that sets limits to analytical questions.

Life force: why energy shapes evolution

Life on earth began some 4 billion years ago, but then got stuck at the level of bacteria for more than 2 billion years. The complex ‘eukaryotic’ cell arose abruptly in a singular event around 1.5–2 billion years ago. All eukaryotes share a long list of complex traits, from the nucleus to sex and senescence, which are all but unknown in bacteria. Why are humans so similar to mushrooms at the level of cells, even though we live so differently? Why did evolution follow such a peculiar trajectory? The answers might lie in the equally strange mechanism by which all cells generate ATP: chemiosmotic coupling.