scholarly journals Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

2014 ◽  
Vol 32 (6) ◽  
pp. 562-568 ◽  
Author(s):  
Jason D Buenrostro ◽  
Carlos L Araya ◽  
Lauren M Chircus ◽  
Curtis J Layton ◽  
Howard Y Chang ◽  
...  
Keyword(s):  
Quantitative Analysis ◽  
Protein Interactions ◽  
Massively Parallel ◽  
Parallel Array

scholarly journals A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice

2020 ◽  
Vol 117 (21) ◽  
pp. 11836-11842 ◽  
Author(s):  
Shayne D. Wierbowski ◽  
Tommy V. Vo ◽  
Pascal Falter-Braun ◽  
Timothy O. Jobe ◽  
Lars H. Kruse ◽  
...  
Keyword(s):  
Protein Interactions ◽  
Massively Parallel ◽  
Model Organisms ◽  
Protein Protein Interactions ◽  
Numerous Model ◽  
High Quality Protein ◽  
Protein Interactome ◽  
Wide Range ◽  
Dna Elements ◽  
General Tool

Systematic mappings of protein interactome networks have provided invaluable functional information for numerous model organisms. Here we developPCR-mediatedLinkage of barcodedAdaptersTo nucleic acidElements forsequencing (PLATE-seq) that serves as a general tool to rapidly sequence thousands of DNA elements. We validate its utility by generating the ORFeome forOryza sativacovering 2,300 genes and constructing a high-quality protein–protein interactome map consisting of 322 interactions between 289 proteins, expanding the known interactions in rice by roughly 50%. Our work paves the way for high-throughput profiling of protein–protein interactions in a wide range of organisms.

Micropatterning for quantitative analysis of protein-protein interactions in living cells

2008 ◽  
Vol 5 (12) ◽  
pp. 1053-1060 ◽  
Author(s):  
Michaela Schwarzenbacher ◽  
Martin Kaltenbrunner ◽  
Mario Brameshuber ◽  
Clemens Hesch ◽  
Wolfgang Paster ◽  
...  
Keyword(s):  
Quantitative Analysis ◽  
Protein Interactions ◽  
Living Cells ◽  
Protein Protein Interactions

Capillary Electrophoresis and Fluorescence Anisotropy for Quantitative Analysis of Peptide−Protein Interactions Using JAK2 and SH2-Bβ as a Model System

2005 ◽  
Vol 77 (8) ◽  
pp. 2482-2489 ◽  
Author(s):  
Peilin Yang ◽  
Rebecca J. Whelan ◽  
Emily E. Jameson ◽  
Jason H. Kurzer ◽  
Lawrence S. Argetsinger ◽  
...  
Keyword(s):  
Capillary Electrophoresis ◽  
Quantitative Analysis ◽  
Protein Interactions ◽  
Fluorescence Anisotropy ◽  
Model System

scholarly journals Hydrothermal co-liquefaction of biomasses – quantitative analysis of bio-crude and aqueous phase composition

2017 ◽  
Vol 1 (4) ◽  
pp. 789-805 ◽  
Author(s):  
René B. Madsen ◽  
Rikke Z. K. Bernberg ◽  
Patrick Biller ◽  
Jacob Becker ◽  
Bo B. Iversen ◽  
...  
Keyword(s):  
Phase Composition ◽  
Quantitative Analysis ◽  
Aqueous Phase ◽  
Protein Interactions ◽  
Hydrothermal Liquefaction ◽  
Oxygen Distribution ◽  
Product Composition ◽  
Biochemical Components

Hydrothermal liquefaction of 11 biomasses and their co-liquefaction mixtures show how product composition depends on feedstock biochemical components, while nitrogen and oxygen distribution is controlled by carbohydrate and protein interactions.

scholarly journals Quantitative Analysis of Cohesin Complex Stoichiometry and SMC3 Modification-Dependent Protein Interactions

2011 ◽  
Vol 10 (8) ◽  
pp. 3652-3659 ◽  
Author(s):  
Chen Ding ◽  
Yehua Li ◽  
Beom-Jun Kim ◽  
Anna Malovannaya ◽  
Sung Yun Jung ◽  
...  
Keyword(s):  
Quantitative Analysis ◽  
Protein Interactions ◽  
Cohesin Complex ◽  
Complex Stoichiometry ◽  
Dependent Protein
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