positive regulatory element
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2009 ◽  
Vol 145 (3) ◽  
pp. 279-288 ◽  
Author(s):  
Y. Imamura ◽  
Y. Fujigaki ◽  
Y. Oomori ◽  
K. Ouryouji ◽  
S. Yanagisawa ◽  
...  

2007 ◽  
Vol 189 (10) ◽  
pp. 3922-3926 ◽  
Author(s):  
Çagla Tükel ◽  
Mustafa Akçelik ◽  
Maarten F. de Jong ◽  
Ömer Şimşek ◽  
Renée M. Tsolis ◽  
...  

ABSTRACT MisL is a Salmonella enterica serotype Typhimurium fibronectin binding protein whose expression is induced during infection of mice. T-POP transposon mutagenesis identified marT as a positive regulatory element controlling expression of a misL::lacZYA transcriptional fusion. Gel shift analysis identified MarT as a transcriptional activator of the misL promoter.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 1572-1572
Author(s):  
Patrick G. Gallagher ◽  
Douglas G. Nilson ◽  
Jolinta Lin ◽  
David M. Bodine

Abstract Characterization of the regulatory elements that control α-spectrin (ASp) gene expression is important for understanding the pathogenesis of ASp-linked hemolytic anemia. Our previous studies demonstrated that the ASp promoter directs low levels of expression, and, addition of a downstream region of noncoding exon 1 and intron 1 containing 2 GATA-1 sites conferred a 10-fold increase in activity in transient transfection assays. Transgenic (TG) mouse lines with the ASp promoter, the Asp promoter-exon 1-intron 1, or ASp promoter-exon 1-intron 1 with mutations of both splice sites linked to the human Aγ-globin gene as reporter were created. In reticultocytes, no expression was detected in any of the 8 lines transmitting the ASp promoter-Aγ-globin transgene. TG mice with the ASp promoter-exon1-intron 1 demonstrated significant levels of Aγ-globin gene expression in reticulocytes, with levels of Aγ-globin mRNA of ~0.4% of mouse α-globin mRNA/transgene copy #. This expression was nearly position independent, as 22/24 lines expressed the transgene. Using a FACS-based assay, γ-globin protein was present in 100% of erythrocytes. Expression levels comparable to the Asp promoter-exon 1-intron 1 TG were detected in 9/9 lines with the mutated splice sites, indicating splicing did not contribute to changes in expression. DNaseI hypersensitive site (HS) mapping identified a broad, erythroid-specific HS across exon 1 and intron 1. The presence of a DNaseI HS site suggested the presence of a positive regulatory element or a chromatin modification such as a boundary element. Analysis of a positive regulatory element in vivo was sought by stably transfecting the following luciferase (luc) plasmids into K562 cells: ASp promoter, ASp promoter-exon 1-intron 1, ASp promoter-exon 1, ASp promoter-intron 1, and ASp promoter-exon 1-intron 1 with both GATA-1 sites mutated. Clones with copy # ≤5 were analyzed; ≥9 independent clones/line were analyzed. Normalized luc activity of the ASp promoter-exon 1-intron 1 was significantly higher than the ASp promoter in stably transfected cells, 86±15 v 28±3 (p<0.001). Mutation of both GATA-1 sites in the exon 1-intron 1 plasmid reduced activity to background. Normalized luc activity from the promoter-exon was 46±6; from the promoter-intron 101±31, suggesting the intron functions as a positive regulatory element. A barrier assay was performed by flanking a β-globin promoter-EGFP gene using wild type (WT) exon 1, exon 1 with the GATA site abolished, or WT intron 1, and stably transfecting the plasmids into K562 cells. The WT exon 1 and mutant exon 1 expressed GFP in 10/12 and 7/8 lines, respectively, indicating a barrier function for exon 1 independent of GATA-1 activity. Only 1/9 lines expressed EGFP when the cassette was flanked by the ASp intron and 0/8 expressed EGFP when there were no sequences flanking the β-globin promoter. TG mouse lines with the Asp promoter-exon 1 or the Asp promoter-intron 1 linked to the Aγ-globin gene were created. 1/5 TG lines with ASp promoter-exon 1 expressed at low levels and 3/7 TG lines with ASp promoter-intron 1 expressed at levels comparable to the ASp promoter-exon 1-intron 1. These results demonstrate that 2 elements downstream of the ASp promoter are required for high-level, erythroid-specific expression. Exon 1 has barrier activity and intron 1 functions as a positive regulatory element. This is an excellent candidate region for mutations associated with ASp-linked inherited hemolytic anemia.


Microbiology ◽  
2004 ◽  
Vol 150 (4) ◽  
pp. 945-952 ◽  
Author(s):  
Susumu Sakurai ◽  
Hitoshi Suzuki ◽  
Toshiaki Hata ◽  
Yukio Yoshizawa ◽  
Ritsuko Nakayama ◽  
...  

A 1·4 kb positive regulatory element (ETAexp ) that controls staphylococcal exfoliative toxin A (sETA) transcription was cloned from Staphylococcus aureus. ETAexp is located upstream of the cloned 5·8 kb eta gene (etaJ1) obtained from the chomosomal DNA of S. aureus ZM, the standard ETA-producing strain. The cETA prepared from an Escherichia coli transformant into which the recombinant plasmid petaJ1 (5·8 kb eta/pUC9) had been introduced was expressed at high levels in the culture supernatant and the ammonium-sulfate-precipitated culture supernatant fraction as shown by immunoblotting and the single radial immunodiffusion test. However, cETA produced by the recombinant plasmid petaJ3 containing the 1·7 kb eta sequence (etaJ3) with a 1·45 kb ETAexp -deficient eta fragment (1·7 kb eta/pUC9) obtained from the 5·8 kb eta sequence by subcloning was not detected in either the culture supernatant or the ammonium-sulfate-precipitated culture supernatant fraction (167-fold concentrate of the culture supernatant) by immunoblotting or the single radial immunodiffusion test. A large amount of cETA was produced by the 1·7 kb eta sequence when it was linked to ETAexp amplified by PCR (1·7 kb eta-ETAexp /pUC9), regardless of the orientation of ETAexp insertion. Northern blot hybridization showed lower levels of the transcripts of the 1·7 kb eta sequence than of the 5·8 kb eta sequence. The rsETA prepared from an S. aureus transformant into which the recombinant plasmid 3·4 kb eta-ETAexp /pYT3 (pYT3-etaJ6) had been introduced was expressed at high levels in the culture supernatant fraction as shown by the latex agglutination test. However, the agglutination titre in the culture supernatant fraction of rsETA produced by the recombinant plasmid (1·7 kb eta/pYT3) containing the 1·7 kb eta sequence carrying the 1·4 kb ETAexp -deficient eta fragment (pYT3-etaJ3) was 2500–4000 times lower than that of pYT3-etaJ6.


2004 ◽  
Vol 37 (3) ◽  
pp. 426-438 ◽  
Author(s):  
Robert J. Meister ◽  
Luis A. Williams ◽  
Mona M. Monfared ◽  
Thomas L. Gallagher ◽  
Edward A. Kraft ◽  
...  

2002 ◽  
Vol 283 (3) ◽  
pp. L619-L627 ◽  
Author(s):  
Traci A. Sanchez ◽  
J. Leland Booth ◽  
Jordan P. Metcalf

The adenovirus (Ad) early gene product 13S transactivates the tumor necrosis factor (TNF)-α promoter in inflammatory cells. We examined both the subdomains of E1A and the upstream TNF promoter elements involved. In both Jurkat and U-937 cells, zinc finger or carboxyl region mutation of Ad E1A 13S conserved region 3 resulted in a significant loss of transactivation of the TNF promoter (≥69%). For both cell types there was a TNF-negative regulatory element in the −242 to −199 region and a positive regulatory element between −199 and −118. In contrast, an upstream positive regulatory element was detected in different regions in both cell types. In U-937 cells the positive regulatory unit was between −600 and −576, whereas in Jurkat cells it was between −576 and −242. The U-937 upstream element was dependent on a site previously designated epsilon in cooperation with an adjacent nuclear factor-κB-2a site. Therefore, transactivation of the TNF promoter by Ad 13S in lymphocyte and monocyte cell types involves similar subdomains of the E1A protein, but cell-specific TNF promoter elements.


2001 ◽  
Vol 65 (6) ◽  
pp. 508-519 ◽  
Author(s):  
Mehreen Hai ◽  
Sanjay I. Bidichandani ◽  
Pragna I. Patel

2000 ◽  
Vol 275 (6) ◽  
pp. 4525-4531 ◽  
Author(s):  
Mônica Senna Salerno ◽  
Viatcheslav A. Mordvinov ◽  
Colin J. Sanderson

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