Absolute Population Estimates Using Capture–Recapture Experiments

The main methods used to estimate population size using capture–recapture for both closed and open populations are described, including the Peterson–Lincoln estimator, the Schabel census, Bailey’s triple catch, the Jolly–Seber stochastic method, and Cormack’s log-linear method. The robust design approach is described. R code listings for commonly used packages are presented. The assumptions common to capture–recapture methods are reviewed, and tests for assumptions such as equal catchability described. The use of programs to select model assumptions are described. The main methods for marking different animal groups are described, together with the use of natural marks and parasites and DNA. Marking methods include paint marks, dyes, tagging, protein marking, DNA, natural marks, tattooing, and mutilation. Methods for handling and release are described.

Demography and population structure of Northeastern mediterranean monk seal population

The Northeastern Mediterranean coasts that border southern Turkey host one of the last strongholds for the survival of the endangered Mediterranean monk seal (Monachus monachus, 1779). The seal colonies inhabiting south coast of Turkey have been studied since 1994 through various short-term research projects focusing on distinct small populations that were thought to be isolated. In this study, the entire extent of the area was monitored approximately for 3 years (between 2015 and 2018) with camera traps places in 20 caves known to be actively used by the seals. A total of 7014 images taken throughout the study period, along with 25,100 images taken previously, were used to identify the seals inhabiting the area. In total, 37 individuals were identified based on the natural marks on the body. Based on photo-identified seals, a mark-recapture method was applied to estimate the total population size within the Northeastern Mediterranean. The overall population size was found to be 46 (SE=7.7) in the case of closed population and 53(SE=34.8) in the case of open population during the study period. The range of identified seals was almost six times larger than previously documented in the same area, reaching distances up to 245 km. The population estimate indicated a decrease in population size compared to previous studies. Finally, the study emphasises the importance of long-term monitoring studies elucidating changes in the demographic parameters in relation to threats posed, rather than cut-paste measurement suggestions which are not applicable in reality, while structuring the conservation actions targeting survival of this highly endangered species.

Photo-identification of individual Southern Hemisphere humpback whales (Megaptera novaeangliae) using all available natural marks:

Misidentification errors in capture-mark recapture studies of humpback whales (Megaptera novaeangliae) related to poor quality of photographs as well as changes in natural marks can seriously affect population dynamics parameter estimates and derived estimates of population size when using sophisticated modelling techniques. In this study we used an innovative photo-identification matching system to investigate and examine the long-term stability and/or changes in natural marks on ventral-tail flukes, dorsal fin shapes and lateral body marks from a sample of 79 individual humpback whales, resighted in 2 to 11 years over timespans ranging from 2 to 21 years. A binary logistic mixed effects model, on a pair-matched sample of the 79 individual whales, found no significant differences in the proportions of ventral-tail fluke marks, dorsal fin shapes and lateral body marks, that displayed changes in primary and/or secondary characteristics over years (F=0.939, df=1/156, p =0.334). The results of this study substantiate the value and reliability of using primary and secondary natural marks on the ventral-tail flukes, in conjunction with dorsal fin shapes and secondary lateral body marks as double-tags. This provides a means of maximising observations of individual humpback whales over years, while minimising and managing misidentification errors in the photo-identification matching process, thus significantly improving modelling outcomes.

Photo-identification of horseshoe whip snakes (Hemorrhois hippocrepis, Linnaeus, 1758) by a semi-automatic procedure applied to wildlife management

Photo-identification is an increasingly used method for the study of animal populations. Natural marks such as coloration or scale pattern to identify individuals provide an inexpensive and less invasive alternative to conventional tagging methods. Photo-identification has previously been used to distinguish individual snakes, usually by comparing the pileus region. Nevertheless, this method is seldom used in capture-recapture studies. We show the effectiveness of photo-identification in snakes using specific software for individual recognition applied to a wildlife control study of horseshoe whip snakes. Photos were analysed with Automatic Photo Identification Suite (APHIS), which allowed us to compare the variability of head scale patterns surrounding the parietal shields instead of the traditional method of using large scale groups of the pileus. APHIS correctly identified 100 % of recaptures of snakes. Although further studies are needed, the variability of the surrounding scales of the pileus region seems a robust method to identify and differentiate individuals.

Photo-identification as a technique for recognition of individual fish: a test with the freshwater armored catfish Rineloricaria aequalicuspis Reis & Cardoso, 2001 (Siluriformes: Loricariidae)

Photo-identification allows individual recognition of animal species based on natural marks, being an alternative to other more stressful artificial tagging/marking techniques. An increasing number of studies with different animal groups has shown that photo-identification can successfully be used in several situations, but its feasibility to study freshwater fishes is yet to be explored. We demonstrate the potential use of photo-identification for intraspecific recognition of individuals in the stream-dwelling loricariid Rineloricaria aequalicuspis . We tested photo-identification in laboratory and field conditions based on the interindividual variability in abdominal bony plates. Our test yielded high correct matches in both laboratory (100%) and field conditions (> 97%), comparable to other reliable techniques and to studies that successfully used photo-identification in other animals. In field conditions, the number of correct matches did not differ statistically between computer-assisted and naked-eye identification. However, the average time expended to conclude computer-assisted photo evaluations was about half of the time expended to conclude naked-eye evaluations. This result may be exacerbated when using database with large number of images. Our results indicate that photo-identification can be a feasible alternative technique to study freshwater fish species, allowing for a wider use of mark-recapture in ecological and behavioral studies.