The retinal pigments of the whale shark (Rhincodon typus) and their role in visual foraging ecology

The spectral tuning properties of the whale shark (Rhincodon typus) rod (rhodopsin or Rh1) and long-wavelength-sensitive (LWS) cone visual pigments were examined to determine whether these retinal pigments have adapted to the broadband light spectrum available for surface foraging or to the narrowband blue-shifted light spectrum available at depth. Recently published whale shark genomes have identified orthologous genes for both the whale shark Rh1 and LWS cone opsins suggesting a duplex retina. Here, the whale shark Rh1 and LWS cone opsin sequences were examined to identify amino acid residues critical for spectral tuning. Surprisingly, the predicted absorbance maximum (λmax) for both the whale shark Rh1 and LWS visual pigments is near 500 nm. Although Rh1 λmax values near 500 nm are typical of terrestrial vertebrates, as well as surface foraging fish, it is uncommon for a vertebrate LWS cone pigment to be so greatly blue-shifted. We propose that the spectral tuning properties of both the whale shark Rh1 and LWS cone pigments are most likely adaptations to the broadband light spectrum available at the surface. Whale shark melanopsin (Opn4) deactivation kinetics was examined to better understand the underlying molecular mechanisms of the pupillary light reflex. Results show that the deactivation rate of whale shark Opn4 is similar to the Opn4 deactivation rate from vertebrates possessing duplex retinae and is significantly faster than the Opn4 deactivation rate from an aquatic rod monochromat lacking functional cone photoreceptors. The rapid deactivation rate of whale shark Opn4 is consistent with a functional cone class and would provide the animal with an exponential increase in the number of photons required for photoreceptor signaling when transitioning from photopic to scotopic light conditions, as is the case when diving.

Early evolution of purple retinal pigments on Earth and implications for exoplanet biosignatures

We propose that retinal-based phototrophy arose early in the evolution of life on Earth, profoundly impacting the development of photosynthesis and creating implications for the search for life beyond our planet. While the early evolutionary history of phototrophy is largely in the realm of the unknown, the onset of oxygenic photosynthesis in primitive cyanobacteria significantly altered the Earth's atmosphere by contributing to the rise of oxygen ~2.3 billion years ago. However, photosynthetic chlorophyll and bacterio chlorophyll pigments lack appreciable absorption at wavelengths about 500–600 nm, an energy-rich region of the solar spectrum. By contrast, simpler retinal-based light-harvesting systems such as the haloarchaeal purple membrane protein bacteriorhodopsin show a strong well-defined peak of absorbance centred at 568 nm, which is complementary to that of chlorophyll pigments. We propose a scenario where simple retinal-based light-harvesting systems like that of the purple chromoprotein bacteriorhodopsin, originally discovered in halophilic Archaea, may have dominated prior to the development of photosynthesis. We explore this hypothesis, termed the ‘Purple Earth,’ and discuss how retinal photopigments may serve as remote biosignatures for exoplanet research.

Carotenoid Content in Field-grown versus Greenhouse-grown Peppers: Different Responses in Leaf and Fruit

The carotenoid content of fresh fruits, like chiles or peppers (Capsicum annuum L.), is a desirable fruit quality trait because these compounds increase the nutritional value of the fruit. Carotenoids in general serve as antioxidants, whereas specific carotenoids are pro-vitamin A types and yet others are necessary for retinal pigments. In the plant, carotenoids function to harvest light energy during photosynthesis, act as antioxidants in multiple cell types, and pigment fruit and flowers to attract pollinators and seed dispersal agents. All of these cells presumably accumulate carotenoids through the same biosynthetic pathway. We investigated the relationship between light levels in the growth environment and the carotenoid levels that accumulated in mature fruit and leaves. Three chile cultivars with orange fruit, ‘Fogo’, ‘Orange Grande’, and ‘NuMex Sunset’, were grown under three different light conditions, shaded greenhouse, unshaded greenhouse, and field in Las Cruces, NM. Foliar carotenoid increased approximately twofold with increased light, whereas carotenoid content in fruit decreased two- to threefold with increased light. All cultivars showed identical trends with light despite having cultivar-specific carotenoid accumulation patterns in their fruit.