mitochondrial clade
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2021 ◽  
Author(s):  
Hannes Schuler ◽  
Radosław Witkowski ◽  
Bart van de Vossenberg ◽  
Björn Hoppe ◽  
Moritz Mittelbach ◽  
...  

Abstract Ambrosia beetles of the Euwallacea fornicatus species complex are emerging tree pests with a broad host range including important agricultural crops. Native to Southeast Asia, these species were introduced into various countries, where they cause considerable damage to many tree species. Here we report several outbreaks of E. fornicatus s.l. in Europe. The first individuals were found in 2017 in a palm house of a botanical garden in Poznan (Poland) whereas in 2020 an outbreak was detected in a tropical greenhouse in Merano (Italy). In 2021, two additional outbreaks were detected in two greenhouses in Germany, in Erfurt and Berlin. For the latter cases it was possible to trace back the invasion to a distributor of exotic plants in the Netherlands where several infected plants were detected. Molecular analysis show that individuals from Poland and Italy are genetically identical but belong to a different mitochondrial clade than individuals in Germany which are identical to most individuals of two greenhouses in the Netherlands. Moreover, in the two greenhouses in the Netherlands we found beetles that belong to another haplotype of E. fornicatus and two haplotypes of E. perbrevis , a species in the E. fornicatus complex, which has not been previously intercepted in Europe. Our study provides novel insights into the invasion history of E. fornicatus and the first eradication measures in Europe. Considering the high potential of introduction and establishment of Euwallacea ambrosia beetles, particular attention should be paid to monitor the presence of these pests in greenhouses across Europe.


2021 ◽  
Author(s):  
Hannes Schuler ◽  
Radosław Witkowski ◽  
Bart van de Vossenberg ◽  
Björn Hoppe ◽  
Moritz Mittelbach ◽  
...  

Abstract Ambrosia beetles of the Euwallacea fornicatus species complex are emerging tree pests with a broad host range including important agricultural crops. Native to Southeast Asia, these species were introduced into various countries, where they cause considerable damage to many tree species. Here we report several outbreaks of E. fornicatus s.l. in Europe. The first individuals were found in 2017 in a palm house of a botanical garden in Poznan (Poland) whereas in 2020 an outbreak was detected in a tropical greenhouse in Merano (Italy). In 2021, two additional outbreaks were detected in two greenhouses in Germany, in Erfurt and Berlin. For the latter cases it was possible to trace back the invasion to a distributor of exotic plants in the Netherlands where several infected plants were detected. Molecular analysis show that individuals from Poland and Italy are genetically identical but belong to a different mitochondrial clade than individuals in Germany which are identical to most individuals of two greenhouses in the Netherlands. Moreover, in the two greenhouses in the Netherlands we found beetles that belong to another haplotype of E. fornicatus and two haplotypes of E. perbrevis, a species in the E. fornicatus complex, which has not been previously intercepted in Europe. Our study provides novel insights into the invasion history of E. fornicatus and the first eradication measures in Europe. Considering the high potential of introduction and establishment of Euwallacea ambrosia beetles, particular attention should be paid to monitor the presence of these pests in greenhouses across Europe.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8598
Author(s):  
Ljubodrag Stanisic ◽  
Jelena M. Aleksić ◽  
Vladimir Dimitrijevic ◽  
Branislav Kovačević ◽  
Jevrosima Stevanovic ◽  
...  

The dominant donkey breed in the Balkans is the mid-sized Balkan donkey with a grey to chocolate coat color. Local breeders from Serbia, however, still maintain a few larger individuals of a lighter coat color, named Banat donkey, and speculate that they are descendants of a Spanish donkey heard that had been transferred to the Banat region by the Hapsburg Queen Maria Theresa in the XVIII century for a specific purpose, to work in local vineyards. We have previously found a unique nuclear gene-pool and a prevalence of mitochondrial Clade 2 haplotypes in several such animals. In this study, we: (i) perform a comparative analysis of 18 morphological traits of the Banat donkey (seven individuals), Balkan donkey (53 individuals from two sub-populations of this breed) and the potential hybrids (eight individuals), and demonstrate the morphological distinctiveness of the Banat donkey, highlighting the diagnostic traits for distinguishing the breed: hip height, croup width, body length and chest depth; (ii) re-analyse published nuclear microsatellite data for these groups, and reveal that, although severely depopulated, the genetically distinct Banat donkey is not severely affected by the loss of genetic diversity and inbreeding; (iii) demonstrate that previously published Banat donkey mitochondrial haplotypes, analyzed genealogically together with those reported in ancient and modern individuals from Spain, Italy, Turkey, Cyprus and Africa, are shared with three Spanish breeds and individuals belonging to Amiata and some other Italian breeds. A unique morphological feature present in Banat and Somali wild donkeys, but also in Amiata donkeys, black stripes on legs, suggests that the origin of Clade 2 donkeys may be much more complex than previously thought. Actions to preserve the Banat donkey, a valuable but critically endangered genetic resource (<100 individuals), are urgent.


2019 ◽  
Vol 286 (1916) ◽  
pp. 20191929 ◽  
Author(s):  
Carly Ameen ◽  
Tatiana R. Feuerborn ◽  
Sarah K. Brown ◽  
Anna Linderholm ◽  
Ardern Hulme-Beaman ◽  
...  

Domestic dogs have been central to life in the North American Arctic for millennia. The ancestors of the Inuit were the first to introduce the widespread usage of dog sledge transportation technology to the Americas, but whether the Inuit adopted local Palaeo-Inuit dogs or introduced a new dog population to the region remains unknown. To test these hypotheses, we generated mitochondrial DNA and geometric morphometric data of skull and dental elements from a total of 922 North American Arctic dogs and wolves spanning over 4500 years. Our analyses revealed that dogs from Inuit sites dating from 2000 BP possess morphological and genetic signatures that distinguish them from earlier Palaeo-Inuit dogs, and identified a novel mitochondrial clade in eastern Siberia and Alaska. The genetic legacy of these Inuit dogs survives today in modern Arctic sledge dogs despite phenotypic differences between archaeological and modern Arctic dogs. Together, our data reveal that Inuit dogs derive from a secondary pre-contact migration of dogs distinct from Palaeo-Inuit dogs, and probably aided the Inuit expansion across the North American Arctic beginning around 1000 BP.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7746 ◽  
Author(s):  
Dean A. Williams ◽  
Nathan D. Rains ◽  
Amanda M. Hale

The Texas horned lizard (Phrynosoma cornutum) inhabits much of the southern Great Plains of North America. Since the 1950s, this species has been extirpated from much of its eastern range and has suffered declines and local extinctions elsewhere, primarily due to habitat loss. Plans are underway to use captive breeding to produce large numbers of Texas horned lizards for reintroduction into areas that were historically occupied by this species and that currently have suitable habitat. We used mitochondrial markers and nuclear microsatellite markers to determine levels of genetic diversity and population structure in 542 Texas horned lizards sampled from across Texas and some neighboring states to help inform these efforts. Texas horned lizards still retain high genetic diversity in many parts of their current range. We found two highly divergent mitochondrial clades (eastern and western) and three major genetic groupings at nuclear microsatellite loci: a west group corresponding to the western mitochondrial clade and north and south groups within the eastern mitochondrial clade. We also found some evidence for human-mediated movement between these genetic clusters that is probably related to the historical importance of this species in the pet trade and as an iconic symbol of the southwestern United States. We do not know, however, if there are fitness costs associated with admixture (especially for the western and eastern clades) or if there are fitness costs to moving these lizards into habitats that are distinctly different from their ancestral areas. If present, either one or both of these fitness costs would decrease the effectiveness of reintroduction efforts. We therefore recommend that reintroduction efforts should maintain current genetic structure by restricting breeding to be between individuals within their respective genetic clusters, and by reintroducing individuals only into those areas that encompass their respective genetic clusters. This cautionary approach is based on the strong divergence between genetic groupings and their correspondence to different ecoregions.


Zootaxa ◽  
2019 ◽  
Vol 4623 (1) ◽  
pp. 1-25 ◽  
Author(s):  
L. LEE GRISMER ◽  
PERRY L. JR. WOOD ◽  
EVAN S. H. QUAH ◽  
MYINT KYAW THURA ◽  
MARK W. HERR ◽  
...  

A herpetological survey of the Indawgyi Wildlife Sanctuary in Kachin State, Myanmar resulted in the discovery of a new species of Cyrtodactylus Gray along the eastern watershed of the Mokso Mountains. An integrative taxonomic analysis based on the mitochondrial ND2 gene, morphology, and color pattern recovered this new species, Cyrtodactylus mombergi sp. nov., as the sister taxon to an undescribed species from Miao, Arunachal Pradesh, India. Bayesian and maximum likelihood analyses recovered notable genetically divergent (4.7%) phylogeographic structure between northern and southern populations of C. mombergi sp. nov. across only 14 km of continuous habitat. Conversely, genetic divergence did not exceed 9.2% between C. mombergi sp. nov. and the undescribed species from Miao from across 355 km of habitat. Cyrtodactylus mombergi sp. nov. belongs to a well-supported, mitochondrial clade of 18 other species which now compose an expanded and redefined C. gansi group. Cyrtodactylus mombergi sp. nov. is only the third species of Bent-toed Gecko reported from Kachin State and indicates that additional herpetological surveys are needed in unexplored forested areas. 


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6424 ◽  
Author(s):  
Marta Maria Ciucani ◽  
Davide Palumbo ◽  
Marco Galaverni ◽  
Patrizia Serventi ◽  
Elena Fabbri ◽  
...  

Background The contemporary Italian wolf (Canis lupus italicus) represents a case of morphological and genetic uniqueness. Today, Italian wolves are also the only documented population to fall exclusively within the mitochondrial haplogroup 2, which was the most diffused across Eurasian and North American wolves during the Late Pleistocene. However, the dynamics leading to such distinctiveness are still debated. Methods In order to shed light on the ancient genetic variability of this wolf population and on the origin of its current diversity, we collected 19 Late Pleistocene-Holocene samples from northern Italy, which we analyzed at a short portion of the hypervariable region 1 of the mitochondrial DNA, highly informative for wolf and dog phylogenetic analyses. Results Four out of the six detected haplotypes matched the ones found in ancient wolves from northern Europe and Beringia, or in modern European and Chinese wolves, and appeared closely related to the two haplotypes currently found in Italian wolves. The haplotype of two Late Pleistocene samples matched with primitive and contemporary dog sequences from the canine mitochondrial clade A. All these haplotypes belonged to haplogroup 2. The only exception was a Holocene sample dated 3,250 years ago, affiliated to haplogroup 1. Discussion In this study we describe the genetic variability of the most ancient wolf specimens from Italy analyzed so far, providing a preliminary overview of the genetic make-up of the population that inhabited this area from the last glacial maximum to the Middle Age period. Our results endorsed that the genetic diversity carried by the Pleistocene wolves here analyzed showed a strong continuity with other northern Eurasian wolf specimens from the same chronological period. Contrarily, the Holocene samples showed a greater similarity only with modern sequences from Europe and Asia, and the occurrence of an haplogroup 1 haplotype allowed to date back previous finding about its presence in this area. Moreover, the unexpected discovery of a 24,700-year-old sample carrying a haplotype that, from the fragment here obtained, falls within the canine clade A, could represent the oldest evidence in Europe of such dog-rich clade. All these findings suggest complex population dynamics that deserve to be further investigated based on mitochondrial or whole genome sequencing.


2019 ◽  
Vol 98 (10) ◽  
pp. 1091-1099
Author(s):  
A. O. Vershinina ◽  
J. D. Kapp ◽  
A. E. R. Soares ◽  
P. D. Heintzman ◽  
C. Lowson ◽  
...  

Genetics ◽  
2015 ◽  
Vol 200 (2) ◽  
pp. 581-590 ◽  
Author(s):  
Ana Signorovitch ◽  
Jae Hur ◽  
Eugene Gladyshev ◽  
Matthew Meselson

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