Mixed-stock analysis of striped bass in two rivers of the Bay of Fundy as revealed by mitochondrial DMA

Mark–recapture studies have shown that striped bass from the Hudson River and Chesapeake Bay migrate to the Bay of Fundy and its tributaries during spring and summer. The objective of this study was to determine the relative contributions of U.S. stocks and the endemic Shubenacadie River population to the adult striped bass aggregations that occurred during 1992 and 1993 in two rivers of the Bay of Fundy: the Saint John River, New Brunswick (where striped bass spawning may not presently occur), and the Shubenacadie River, Nova Scotia (where striped bass spawning occurs). Mitochondrial DNA genotype frequency data were used in a mixture model. Up to 97% of adults from the Saint John River were determined to be of U.S. origin, whereas less than 10% of adult striped bass collected in the Shubenacadie River were migrants from U.S. stocks. Consequently, we suggest that efforts to maintain or restore the Saint John River population with native broodstock may be unsuccessful owing to possible extinction of the native stock; however, protection of the Shubenacadie River spawning stock should be enhanced.

Mitochondrial DNA Variation in Striped Bass (Morone saxatilis) from Canadian Rivers

Mitochondrial DNA(mtDNA)was analysed to determine the genetic relatedness of striped bass (Morone saxatilis) populations in tributaries to the Gulf of St. Lawrence and the Bay of Funday. Mitochondrial DNA genotype frequencies were compared with those of striped bass from the Shubenacadie River (Bay of Fundy) and the Miramichi and Tabusintac rivers (Gulf of St. Lawrence). These mtDNA genotype frequencies were compared with those of striped bass representative of the Atlantic coastal migratory stock originating in the Hudson River and Chesapeake Bay. Differences in the frequencies of mtDNA length variants permitted discrimination of the Shubenacadie River from the Miramichi River and Tabusintac River populations and all three Canadian populations from the U S. spawned costal migratory stock. No difference in the frequency of mtDNA length variants was observed between Tabusintac River and Miramichi River striped bass. Heteroplasmy for mtDNA length variants was observed in 35% of Gulf of St. Lawrence fish, the highest frequency observed in any striped bass population. These results highlight the genetic heterogeneity of these Canadian striped bass populations and their distinctiveness from U S. stocks. Future efforts to restore these depleted Canadian striped bass populations should consider the impact of stock transfer on endemic striped bass gene pools.

Analysis of coyote mitochondrial DNA genotype frequencies: estimation of the effective number of alleles.

A restriction-site survey of 327 coyotes (Canis latrans) from most parts of their North American range reveals 32 mitochondrial DNA (mtDNA) genotypes. The genotypes are not strongly partitioned in space, suggesting that there is high gene flow among coyote subpopulations. Consequently, each new geographic location added to the study has a decreasing probability of containing a mtDNA genotype that had not been previously discovered. This being the case, by using Monte Carlo sampling experiments, we can estimate the total number of genotypes that would be found if all possible localities were surveyed. This estimate of total genotypic variability agrees qualitatively with estimates based on theoretical considerations of the expected number of alleles in a stable population. We also predict effective population sizes from genotype data. The accuracy of these estimates is thought to be dependent on the fact that coyotes are not highly genetically structured, a situation which may apply to highly mobile species.