kinetic folding Latest Research Papers

Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots

Journal of Computational Biology ◽

10.1089/cmb.2020.0606 ◽

2021 ◽

Author(s):

Vo Hong Thanh ◽

Dani Korpela ◽

Pekka Orponen

Keyword(s):

Secondary Structures ◽

Rna Secondary Structures ◽

Kinetic Folding

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Random Formation of G-Quadruplexes in the Full-Length Human Telomere Overhangs Leads to a Kinetic Folding Pattern with Targetable Vacant G-Tracts

Biochemistry ◽

10.1021/acs.biochem.8b00957 ◽

2018 ◽

Vol 57 (51) ◽

pp. 6946-6955 ◽

Cited By ~ 9

Author(s):

Jibin Abraham Punnoose ◽

Yue Ma ◽

Mohammed Enamul Hoque ◽

Yunxi Cui ◽

Shogo Sasaki ◽

...

Keyword(s):

Full Length ◽

Folding Pattern ◽

Human Telomere ◽

Kinetic Folding

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Identification and Rationalization of Kinetic Folding Intermediates for a Low-Density Lipoprotein Receptor Ligand-Binding Module

Biochemistry ◽

10.1021/acs.biochem.8b00466 ◽

2018 ◽

Vol 57 (32) ◽

pp. 4776-4787 ◽

Cited By ~ 3

Author(s):

Or Szekely ◽

Gad Armony ◽

Gregory Lars Olsen ◽

Lavi S. Bigman ◽

Yaakov Levy ◽

...

Keyword(s):

Ligand Binding ◽

Low Density Lipoprotein ◽

Density Lipoprotein ◽

Low Density ◽

Lipoprotein Receptor ◽

Low Density Lipoprotein Receptor ◽

Receptor Ligand ◽

Folding Intermediates ◽

Density Lipoprotein Receptor ◽

Kinetic Folding

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The Knotted Protein UCH-L1 Exhibits Partially Unfolded Forms under Native Conditions that Share Common Structural Features with Its Kinetic Folding Intermediates

Journal of Molecular Biology ◽

10.1016/j.jmb.2016.04.002 ◽

2016 ◽

Vol 428 (11) ◽

pp. 2507-2520 ◽

Cited By ~ 23

Author(s):

Shih-Chi Lou ◽

Svava Wetzel ◽

Hongyu Zhang ◽

Elizabeth W. Crone ◽

Yun-Tzai Lee ◽

...

Keyword(s):

Structural Features ◽

Folding Intermediates ◽

Knotted Protein ◽

Partially Unfolded ◽

Kinetic Folding

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Thermodynamic and Kinetic Folding of Riboswitches

Methods in Enzymology - Computational Methods for Understanding Riboswitches ◽

10.1016/bs.mie.2014.10.060 ◽

2015 ◽

pp. 193-213 ◽

Cited By ~ 12

Author(s):

Stefan Badelt ◽

Stefan Hammer ◽

Christoph Flamm ◽

Ivo L. Hofacker

Keyword(s):

Kinetic Folding

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Kinetic Folding Design of Aptazyme-Regulated Expression Devices as Riboswitches for Metabolic Engineering

Methods in Enzymology - Riboswitches as Targets and Tools ◽

10.1016/bs.mie.2014.10.038 ◽

2015 ◽

pp. 321-340 ◽

Cited By ~ 2

Author(s):

David Sparkman-Yager ◽

Rodrigo A. Correa-Rojas ◽

James M. Carothers

Keyword(s):

Metabolic Engineering ◽

Regulated Expression ◽

Kinetic Folding

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Computational Design of RNA Parts, Devices, and Transcripts with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters

Methods in Molecular Biology - Computational Methods in Synthetic Biology ◽

10.1007/978-1-4939-1878-2_3 ◽

2014 ◽

pp. 45-61 ◽

Cited By ~ 5

Author(s):

Tim Thimmaiah ◽

William E. Voje ◽

James M. Carothers

Keyword(s):

Computational Design ◽

Kinetic Folding

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Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information

Bioinformatics ◽

10.1093/bioinformatics/btt050 ◽

2013 ◽

Vol 29 (6) ◽

pp. 704-710 ◽

Cited By ~ 6

Author(s):

James W. J. Anderson ◽

Pierre A. Haas ◽

Leigh-Anne Mathieson ◽

Vladimir Volynkin ◽

Rune Lyngsø ◽

...

Keyword(s):

Evolutionary Information ◽

Stochastic Context Free Grammars ◽

Context Free ◽

Context Free Grammars ◽

Kinetic Folding

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Native-State Heterogeneity of β2-Microglobulin as Revealed by Kinetic Folding and Real-Time NMR Experiments

Journal of Molecular Biology ◽

10.1016/j.jmb.2012.11.004 ◽

2013 ◽

Vol 425 (2) ◽

pp. 257-272 ◽

Cited By ~ 14

Author(s):

Atsushi Mukaiyama ◽

Takashi Nakamura ◽

Koki Makabe ◽

Kosuke Maki ◽

Yuji Goto ◽

...

Keyword(s):

Real Time ◽

Native State ◽

Β2 Microglobulin ◽

Kinetic Folding

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Kinetic Folding Mechanism of an Integral Membrane Protein Examined by Pulsed Oxidative Labeling and Mass Spectrometry

Journal of Molecular Biology ◽

10.1016/j.jmb.2011.04.074 ◽

2011 ◽

Vol 410 (1) ◽

pp. 146-158 ◽

Cited By ~ 26

Author(s):

Yan Pan ◽

Leonid Brown ◽

Lars Konermann

Keyword(s):

Mass Spectrometry ◽

Membrane Protein ◽

Integral Membrane Protein ◽

Folding Mechanism ◽

Kinetic Folding

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kinetic folding
Recently Published Documents

TOTAL DOCUMENTS

H-INDEX

Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots

Random Formation of G-Quadruplexes in the Full-Length Human Telomere Overhangs Leads to a Kinetic Folding Pattern with Targetable Vacant G-Tracts

Identification and Rationalization of Kinetic Folding Intermediates for a Low-Density Lipoprotein Receptor Ligand-Binding Module

The Knotted Protein UCH-L1 Exhibits Partially Unfolded Forms under Native Conditions that Share Common Structural Features with Its Kinetic Folding Intermediates

Thermodynamic and Kinetic Folding of Riboswitches

Kinetic Folding Design of Aptazyme-Regulated Expression Devices as Riboswitches for Metabolic Engineering

Computational Design of RNA Parts, Devices, and Transcripts with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters

Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information

Native-State Heterogeneity of β2-Microglobulin as Revealed by Kinetic Folding and Real-Time NMR Experiments

Kinetic Folding Mechanism of an Integral Membrane Protein Examined by Pulsed Oxidative Labeling and Mass Spectrometry

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kinetic foldingRecently Published Documents

TOTAL DOCUMENTS

H-INDEX

Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots

Random Formation of G-Quadruplexes in the Full-Length Human Telomere Overhangs Leads to a Kinetic Folding Pattern with Targetable Vacant G-Tracts

Identification and Rationalization of Kinetic Folding Intermediates for a Low-Density Lipoprotein Receptor Ligand-Binding Module

The Knotted Protein UCH-L1 Exhibits Partially Unfolded Forms under Native Conditions that Share Common Structural Features with Its Kinetic Folding Intermediates

Thermodynamic and Kinetic Folding of Riboswitches

Kinetic Folding Design of Aptazyme-Regulated Expression Devices as Riboswitches for Metabolic Engineering

Computational Design of RNA Parts, Devices, and Transcripts with Kinetic Folding Algorithms Implemented on Multiprocessor Clusters

Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information

Native-State Heterogeneity of β2-Microglobulin as Revealed by Kinetic Folding and Real-Time NMR Experiments

Kinetic Folding Mechanism of an Integral Membrane Protein Examined by Pulsed Oxidative Labeling and Mass Spectrometry

kinetic folding
Recently Published Documents