Large-scale comparative genomics unravels great genomic diversity across the Rickettsia and Ca. Megaira genera and identifies Torix group as an evolutionarily distinct clade.

Rickettsia are intracellular bacteria originally described as arthropod borne pathogens that are emerging as a diverse group of often biologically important, non-pathogenic symbionts of invertebrates and microeukaryotes. However, sparse genomic resources for symbiotic strains and for the sister genus (Candidatus Megaira) inhibit our understanding of Rickettsia evolution and biology. Here, we present the first closed genomes of Ca. Megaira from an alga (Mesostigma viride), and Torix Rickettsia from midge (Culicoides impunctatus) and bed bug (Cimex lectularius) hosts. Additionally, we sequenced and constructed draft genomes for Ca. Megaira from another alga (Carteria cerasiformis), Transitional group Rickettsia from tsetse fly (Glossina morsitans submorsitans), and Torix Rickettsia from a spider mite (Bryobia graminum). We further extract 22 draft genomes from arthropod genome sequencing projects, including 1 Adalia, 4 Transitional, 1 Spotted Fever, 7 Torix, 7 Belli and the first Rhyzobius and Meloidae Rickettsia group genomes. We used new and existing Rickettsia genomes to estimate the phylogeny and metabolic potential across groups and reveal transitions in genomic properties. These data reveal Torix as unique amongst currently described Rickettsia, with highly distinct and diverse accessory genomes. We confirm the presence of a third subclade of Torix, previously only known from gene marker sequences. Further, Torix share an intact pentose phosphate pathway with Ca. Megaira, not observed in other Rickettsia. Considering the distinctness and diversity of Torix, we propose that the group be named Candidatus Tisiphia. The wide host range of Ca. Tisiphia symbionts necessitates onward research to understand the biological and physiological bases of Ca. Tisiphia-host interactions.

Diversity of tsetse flies and trypanosome species circulating in the area of Lake Iro in southeastern Chad

Background African trypanosomiases are vector-borne diseases that affect humans and livestock in sub-Saharan Africa. Although data have been collected on tsetse fauna as well as trypanosome infections in tsetse flies and mammals in foci of sleeping sickness in Chad, the situation of tsetse fly-transmitted trypanosomes remains unknown in several tsetse-infested areas of Chad. This study was designed to fill this epidemiological knowledge gap by determining the tsetse fauna as well as the trypanosomes infecting tsetse flies in the area of Lake Iro in southeastern Chad. Methods Tsetse flies were trapped along the Salamat River using biconical traps. The proboscis and tsetse body were removed from each fly. DNA was extracted from the proboscis using proteinase K and phosphate buffer and from the tsetse body using Chelex 5%. Tsetse flies were identified by amplifying and sequencing the cytochrome c oxydase I gene of each tsetse fly. Trypanosome species were detected by amplifying and sequencing the internal transcribed spacer 1 of infecting trypanosomes. Results A total of 617 tsetse flies were trapped; the apparent density of flies per trap per day was 2. 6. Of the trapped flies, 359 were randomly selected for the molecular identification and for the detection of infecting trypanosomes. Glossina morsitans submorsitans (96.1%) was the dominant tsetse fly species followed by G. fuscipes fuscipes (3.1%) and G. tachinoides (0.8%). Four trypanosome species, including Trypanosoma vivax, T. simiae, T. godfreyi and T. congolense savannah, were detected. Both single infection (56.7%) and mixed infections of trypanosomes (4.6%) were detected in G. m. submorsitans. The single infection included T. simiae (20.5%), T. congolense savannah (16.43%), T. vivax (11.7%) and T. godfreyi (9.8%). The trypanosome infection rate was 61.4% in G. m. submorsitans, 72.7% in G. f. fuscipes and 66.6% in G. tachinoides. Trypanosome infections were more prevalent in tsetse bodies (40.6%) than in the proboscis (16.3%). Conclusion This study revealed the presence of different tsetse species and a diversity of trypanosomes pathogenic to livestock in the area of Lake Iro. The results highlight the risks and constraints that animal African trypanosomiasis pose to livestock breeding and the importance of assessing trypanosome infections in livestock in this area.

Sodalis Glossinidius and Wolbachia Infections in Wild Population of Glossina Morsitans Submorsitans Caught in the Area of Lake Iro in the South of Chad

Background: To improve vector control of tsetse transmitted trypanosomiases through a better understanging of the vectorial competence of tsetse flies, investigations have been undertaken on the bacterial fauna of different tsetse species. It is in this light that Wolbachia and Sodalis glossinidius were detected in wild populations of Glossina morsistans submorsistans caught in the area of lake Iro in the south of Chad with the aim of generating data that may help to understand the influence of these symbiotic microorganisms on the vectorial competence of G. m. submorsistans. Methods: Tsetse flies were captured using biconical traps. DNA was extracted from tsetse body using the resin chelex. Sodalis glossinidius and Wolbachia were investigated by PCR using specific primers for pSG 2 and wsp genes. Comparisons between S. glossinidius and Wolbachia infections were performed according to sex and sampling periods and association studies between trypanosome infections and S. glossinidius or Wolbachia were performed. Results: From 345 G. m. submorsitans analyzed, 9.0% and 14.5% were respectively infected with S. glossinidius and Wolbachia. Only 2.31% of all tsetse flies hosted the 2 bacteria. Of all trypanosome-infected flies, 7.1% and 9.8% hosted respectively S. glossinidius and Wolbachia. No association was observed between Wolbachia and trypanosomes while significant association (r = 4.992; P = 0.025) was found between S. glossinidius and trypanosome infections. Although significant association (r = 3.147; P = 0.043) was observed between S. glossinidius and T. simiae, none was found with T. congolense or T. godfreyi. Conclusion: This study revealed S. glossinidius and Wolbachia in wild population of G. m. submorsitans of lake Iro. It showed that few tsetse flies are co-infected by Wolbachia and S. glossinidius. The presence of S. glossinidius seems to favor trypanosome infections while Wolbachia has probably no effect. Decrypting the tripartite association requires to investigate the relationship between haplotypes or genotypes of Wolbachia and/or S. glossiniduis and trypanosome infections.

Bovine trypanosomosis and its fly vectors in three selected settlement areas of Hawa-Gelan district, western Ethiopia

A cross-sectional study aimed at investigating the species diversity of fly vectors and estimating the prevalence of bovine trypanosomosis was carried out from October 2009 to May 2010 in selected settlement areas of the Hawa-Gelan district in the western Wollega zone of Ethiopia. Standard methods of sampling and identification were employed for both entomological and parasitological examination. Three species of the genus Glossina (Glossina pallidipes, Glossina morsitans submorsitans and Glossina fuscipes) and two genera of biting flies (Stomoxys and Tabanus) were caught and identified. The overall apparent density of Glossina species caught was 10.5 flies per trap per day, with a higher proportion of female flies (57.2%). Out of a total 389 cattle examined, 42 (10.8%; 95% CI: 7.89% – 14.3%) were found infected with trypanosomes. Three trypanosome species were detected in the study area, namely Trypanosoma congolense (54.8%), Trypanosoma brucei (23.8%) and Trypanosoma vivax (21.4%). The prevalence of trypanosomosis was found to be significantly (p < 0.05) higher in cattle with poor body condition. There was an association between mean packed cell volume (PCV) and the occurrence of parasitaemia (χ2 = 49.5, p < 0.05). About 95.2% of cattle that were positive for trypanosomes had a PCV less than the lower limit for cattle. Considering the current result, bovine trypanosomosis seems to be a serious constraint for agricultural activities in the settlement areas of the Hawa-Gelan district and seems to be associated with the presence of Glossina species. Therefore, application of control methods through community involvement to reduce the Glossina species infestation level is likely to increase animal productivity.

Spatial clustering and associations of two savannah tsetse species, Glossina morsitans submorsitans and Glossina pallidipes (Diptera: Glossinidae), for guiding interventions in an adaptive cattle health management framework

The paper deals with tsetse (family Glossinidae) control and aims at improving the methodology for precision targeting interventions in an adaptive pest management system. The spatio-temporal distribution of Glossina morsitans submorsitans Newstead, and Glossina pallidipes Austen, at Ethiopia's Keto pilot site, is analyzed with the spatial analysis by distance indices (SADIE) methodology that focus on clustering and spatial associations between species and between sexes. Both species displayed an aggregated distribution characterised by two main patches in the south and an extended gap in the north. Spatial patterns were positively correlated and stable in most cases, with the exception of the early dry season and the short rainy season when there were differences between the species and sexes. For precision targeting interventions, the presented methods here are more effective than the previously used geostatistical analyses for identifying and delimiting hot spots on maps, measuring shapes and sizes of patches, and discarding areas with low tsetse density. Because of the improved knowledge on hot spot occurrences, the methods allow a better delimitation of the territory for control operations and a more precise computation of the number of the relatively expensive traps used for monitoring and control purposes.

Bovine trypanosomosis in Gimbi district of Western Oromia, Ethiopia

A study on the epidemiology of bovine trypanosomosis was conducted from September 2006 to April 2007 in six villages of the Gimbi district in west Wollega zone of Ethiopia. The prevalence of the disease, the apparent densities and distribution of tsetse and other biting flies in two seasons, the dry and rainy, were determined. The results of a questionnaire survey from 80 farmers revealed that trypanosomosis was a major health problem affecting animals and impeding agricultural activities.A total of 568 blood samples were collected from randomly selected animals (280 animals in rainy and 288 in dry season) and revealed the presence of Trypanosoma congolense Broden, 1904 and T. vivax Zieman, 1905 in the area. Trypanosoma congolense was the dominant species that accounted for 66.2% of the infections. The mean packed cell volume (PCV) concentrations were 22.77% (95% CI =19.99-21.55) in parasitaemic and 25.25% (95% CI=24.88-25.61) in aparasitaemic animals with a significant difference (P<0.005). There was a significant (P<0.012) difference in trypanosome infection between age groups of cattle, being higher in adults. The overall prevalence of trypanosomosis was 12.5%, while the disease prevalence was higher during the rainy season (15 %) than the dry season (10.1%). In three villages of lowland areas (below 1600 meter above sea level), a higher prevalence was recorded 20.9% and 7.9% as compared to three villages of midland areas (≥ 1600 meter above sea level) 11.8% and 8.3% in late rainy and dry season, respectively.A fly-survey was conducted by using 80 monoconical pyramidal traps and revealed that two tsetse species, namely Glossina morsitans submorsitans Newstead and Glossina tachinoides Westwood were found along with other biting flies (Tabanus, Haematopota and Stomoxys species). Higher numerical catches of Glossina were recorded in late rainy season and the apparent density was positively correlated (r=0.5171) with the prevalence of infection.

Half a Century of Tsetse and Animal Trypanosomosis Control on the Adamawa Plateau in Cameroon

L’invasion des glossines sur le plateau de l’Adamaoua se situe dans les années 1950 et a entrainé une mortalité élevée des bovins à cause de la trypanosomose et des émigrations massives des éleveurs de la zone infestée. Trois espèces de mouches tsé-tsé ont été relevées : Glossina morsitans submorsitans, G. fuscipes fuscipes et G. tachinoides. Entre 1960 et 1975, le Gouvernement camerounais a organisé des campagnes de traitement aux trypanocides de masse du bétail. Des activités de lutte contre les glossines ont ensuite été initiées. Entre 1976 et 1994, plusieurs campagnes régulières de pulvérisation aérienne ont été réalisées aboutissant à l’assainissement de 3 200 000 hectares de pâturage. Malheureusement des réinvasions ponctuelles de la mouche tsé-tsé dans la zone assainie n’ont pas pu être évitées. Afin de prévenir la réinvasion des glossines à partir de la plaine de Koutine (au niveau du plateau de l’Adamaoua), des barrières constituées de pièges et d’écrans ont été créées. Cependant des feux de brousse ont détruit la plupart des piètes et de écrans peu après leur mise en place en 1994. Ils ont alors été remplacés par un programme de traitements insecticides du bétail. Des enquêtes transversales et longitudinales parasitologiques et entomologiques en 2004 et 2005 ont montré que la barrière constituée de bétail traité aux insecticides avait réussi à maintenir le plateau relativement indemne de glossines. L’incidence de la trypanosomose enregistrée chez le bétail du plateau variait entre 0 et 2,1 p. 100. Cependant une prévalence élevée inquiétante de résistance aux produits trypanocides a été rapportée récemment dans le département du Faro et Déo. Dans le cadre de la campagne panafricaine d’éradication des mouches tsétsé et des trypanosomoses (Pattec), le Cameroun est actuellement en train de préparer un projet commun avec le Tchad, la République d’Afrique centrale et le Nigeria pour éradiquer les mouches tsé-tsé et les trypanosomoses.