biochemical modeling
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2020 ◽  
Vol 21 (20) ◽  
pp. 7787
Author(s):  
Théo Le Moigne ◽  
Pierre Crozet ◽  
Stéphane D. Lemaire ◽  
Julien Henri

The Calvin–Benson cycle is the key metabolic pathway of photosynthesis responsible for carbon fixation and relies on eleven conserved enzymes. Ribose-5-phosphate isomerase (RPI) isomerizes ribose-5-phosphate into ribulose-5-phosphate and contributes to the regeneration of the Rubisco substrate. Plant RPI is the target of diverse post-translational modifications including phosphorylation and thiol-based modifications to presumably adjust its activity to the photosynthetic electron flow. Here, we describe the first experimental structure of a photosynthetic RPI at 1.4 Å resolution. Our structure confirms the composition of the catalytic pocket of the enzyme. We describe the homo-dimeric state of the protein that we observed in the crystal and in solution. We also map the positions of previously reported post-translational modifications and propose mechanisms by which they may impact the catalytic parameters. The structural data will inform the biochemical modeling of photosynthesis.


ACS Catalysis ◽  
2016 ◽  
Vol 6 (3) ◽  
pp. 1624-1629 ◽  
Author(s):  
Sandra Acebes ◽  
Elena Fernandez-Fueyo ◽  
Emanuele Monza ◽  
M. Fatima Lucas ◽  
David Almendral ◽  
...  

2012 ◽  
Vol 8 (2) ◽  
pp. 418-427 ◽  
Author(s):  
Jan Řezáč ◽  
Bernard Lévy ◽  
Isabelle Demachy ◽  
Aurélien de la Lande

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