An Annotated List of Legume-Infecting Viruses in the Light of Metagenomics

Legumes, one of the most important sources of human food and animal feed, are known to be susceptible to a plethora of plant viruses. Many of these viruses cause diseases which severely impact legume production worldwide. The causal agents of some important virus-like diseases remain unknown. In recent years, high-throughput sequencing technologies have enabled us to identify many new viruses in various crops, including legumes. This review aims to present an updated list of legume-infecting viruses. Until 2020, a total of 168 plant viruses belonging to 39 genera and 16 families, officially recognized by the International Committee on Taxonomy of Viruses (ICTV), were reported to naturally infect common bean, cowpea, chickpea, faba-bean, groundnut, lentil, peas, alfalfa, clovers, and/or annual medics. Several novel legume viruses are still pending approval by ICTV. The epidemiology of many of the legume viruses are of specific interest due to their seed-transmission and their dynamic spread by insect-vectors. In this review, major aspects of legume virus epidemiology and integrated control approaches are also summarized.

Phenological and growth response of legume cover crops to shading

SUMMARYAnnual medics and clovers have distinct properties in terms of usage as cover crops in Mediterranean orchards, but little is known of their capacity to adapt to the level of shading encountered on an orchard floor. A 2-year field experiment was conducted in South–Eastern Sicily to investigate the effects of withholding 0·50 of sunlight on the phenology and growth pattern of four medic and five clover accessions, focusing on traits known to be important for cover cropping. Shading delayed both seedling emergence and the onset of flowering (by up to 5 and 9 days, respectively), while it extended both the growth period and the overall life-cycle duration (by up to 5 and 11 days, respectively). It also induced an increase in cover crop height (from 34 to 38 cm) and crop light use (from 0·60 to 0·94 g DW/m2/MJ), but a reduction in soil coverage, above-ground dry biomass, maximum growth rate and maximum relative growth rate (by up to 13, 18, 21 and 7%, respectively), so compromising the competitiveness of cover crops against weeds. The responses to shading varied between genotypes. Medicago polymorpha ecotype S. Rosalia, Medicago rugosa ecotype Piano Lauro and ecotype Zappulla were the strongest competitors against weeds, whereas Trifolium tomentosum ecotype Bucampello was interesting in terms of its biomass yield and crop light use. The performance was unstable over seasons, so any future attempt to improve the species’ performances under shade by breeding will need to focus on reseeding capacity.

Virus diseases of annual pasture legumes: incidences, losses, epidemiology, and management

This paper reviews current knowledge concerning the occurrence, losses caused, epidemiology, and management of virus diseases of annual pasture legumes. The viruses commonly present are spread by contact, or aphid vectors either non-persistently or persistently. Whether they are seed-borne and their means of transmission are critical factors determining their incidences within pastures in climatic zones with dry summers or substantial summer rainfall. Large-scale national or state surveys of subterranean clover pastures revealed that some viruses reach high infection incidences. Contamination with seed-borne viruses was widespread in plots belonging to annual pasture legume improvement programs and seed stocks of subterranean clover, annual medics, and alternative annual pasture legumes, and in commercial annual medic seed stocks. Yield loss studies with grazed swards were completed for three common viruses: two in subterranean clover and one in annual medics. These studies demonstrated considerable virus-induced losses in herbage and seed yields, and established that virus infection causes deteriorated pastures with high weed contents even when foliar symptoms are mild. Comprehensive integrated disease management tactics involving phytosanitary, cultural, chemical, or host resistance measures were devised for these three viruses in infected pastures, and for seed-borne viruses in annual pasture legume improvement programs. Several other viruses are potentially important, but, with these, quantification of losses caused in grazed swards is lacking and information on incidences in pastures is currently insufficient. Critical research and development gaps that need addressing are identified.

Breeding and farming system opportunities for pasture legumes facing increasing climate variability in the south-west of Western Australia

The south-west of Western Australia has experienced a declining trend in annual rainfall and gradual warming over the last 30 years. The distribution of rainfall has also changed, with lower autumn rainfall, patchy breaks to the season, and shorter springs. This has important implications for the productivity of legume pastures in the region, which is dominated by annual species, particularly subterranean clover (Trifolium subterraneum L.), annual medics (Medicago spp.), serradella (Ornithopus spp.), and biserrula (Biserrula pelecinus L.). For annual pasture legumes, appropriate patterns of seed softening and germination behaviour, efficiency of phosphorus and potassium uptake, responses to elevated levels of atmospheric CO2, and drought resistance of seedlings and mature plants will assume increasing importance. While these traits can be targeted in pasture breeding programs, it will also be important to exploit farming system opportunities to optimise the annual legume component of the feed base. These opportunities may take the form of incorporating strategic shrub reserves and grazing crops to allow for pasture deferment in autumn–winter. Perennial forages may become more important in this context, as discussed in terms of the development of the perennial legume tedera (Bituminaria bituminosa var. albomarginata C.H. Stirton).

Factors affecting the potential contributions of N2 fixation by legumes in Australian pasture systems

The amounts of foliage nitrogen (N) fixed by various annual and perennial legumes growing in Australian pastures range from <10 to >250 kg N/ha.year. Differences in N2 fixation result from variations in the proportion of the legume-N derived from atmospheric N2 (%Ndfa) and/or the amount of legume-N accumulated during growth. On-farm surveys of %Ndfa achieved by legumes growing in farmers’ paddocks in Australia indicated that N2 fixation contributed >65% of the legume’s N requirements in three-quarters of the annual legumes examined, but this decreased to two-thirds of lucerne (Medicago sativa; also known as alfalfa), and half of white clover (Trifolium repens) samples. Factors such as low numbers or the poor effectiveness of rhizobial strains in the soil, water stress, high soil concentrations of N, and nutrient disorders contribute to poor nodulation and %Ndfa values <65%, but there is also evidence that the observed %Ndfa can be dependent on the legume species present, and whether the legume is grown in a pure stand or in a mixed sward. The accumulation of legume-N relates primarily to the legume content and net productivity of the pasture. For many legume species, ~20 kg of shoot-N is fixed on average for every tonne of herbage dry matter produced. Legume productivity can be influenced by (i) sowing and establishment techniques and other strategies that enhance the legume content in pasture swards; (ii) the amelioration of soil constraints; (iii) the use of new legume species (and host–rhizobial strain combinations) that are more tolerant of hostile soil environments than subterranean clover (T. subterraneum) or annual medics (Medicago spp); and (iv) the inclusion of perennials such as lucerne to offset the year-to-year variability in productivity and N2 fixation that is a common occurrence with annual legumes.

Boron tolerance in annual medics (Medicago spp.)

Boron (B) is present at toxic levels in the subsoils of much of the semiarid south-eastern Australian cereal-livestock zone. Boron toxicity is typically associated with alkaline soils, where annual medics (Medicago spp.) are generally the best-adapted pasture legume. New medic cultivars have been developed for which there is no published B tolerance information. Five species of annual medic represented by 13 cultivars were grown in soil amended with B and evaluated for B tolerance. A rating system based on expression of symptoms was modified from earlier research. There was a wide range of response to B, both between and within species. Cultivars varied widely in their expression of symptoms; from showing no or few leaf symptoms (tolerant) to significant leaf necrosis (very sensitive). An integrated summary of both published and previously, unpubl. data for these and other medics is presented to provide a comprehensive and up-to-date comparison between different species and most commercial cultivars. This information will be useful for plant breeders, agronomists and farmers who manage soils with high B levels.