scholarly journals A new iguanodontian (Dinosauria: Ornithopoda) from the Early Cretaceous of Mongolia

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5300
Author(s):  
Terry A. Gates ◽  
Khishigjav Tsogtbaatar ◽  
Lindsay E. Zanno ◽  
Tsogtbaatar Chinzorig ◽  
Mahito Watabe
Keyword(s):  
Phylogenetic Analysis ◽  
Growth Stage ◽  
Phylogenetic Analyses ◽  
Type Specimen ◽  
Sister Taxon ◽  
New Taxon ◽  
Time Of Death ◽  
The North ◽  
Unusual Combination ◽  
Relationship Of

We describe a new iguanodontian ornithopod,Choyrodon barsboldigen. et sp. nov. from the Albian-aged Khuren Dukh Formation of Mongolia based on several partial skeletons interpreted to represent a subadult growth stage based on osteohistological features. This new taxon is diagnosed by many autapomorphies of the maxilla, nasal, lacrimal, opisthotic, predentary, and surangular.Choyrodondisplays an unusual combination of traits, possessing an open antorbital fenestra (a primitive ornithopod trait) together with derived features such as a downturned dentary and enlarged narial fenestra. Histological imaging suggests that the type specimen ofChoyrodonwould have been a subadult at the time of death. Phylogenetic analysis of two different character matrices do not positChoyrodonto be the sister taxon or to be more primitive than the iguanodontianAltirhinus kurzanovi, which is found in the same formation. The only resolved relationship of this new taxon is that it was hypothesized to be a sister-taxon with the North American speciesEolambia caroljonesa. Though discovered in the same formation andChoyrodonbeing smaller-bodied thanAltirhinus, it does not appear that the former species is an ontogimorph of the latter. Differences in morphology and results of the phylogenetic analyses support their distinction although more specimens of both species will allow better refinement of their uniqueness.

A new Crocus L. (Iridaceae) species from SE Turkey, based on morphological and molecular data

Phytotaxa ◽  
2015 ◽  
Vol 239 (3) ◽  
pp. 223 ◽  
Author(s):  
Osman Erol ◽  
Doerte Harpke ◽  
Hasan Yıldırım
Keyword(s):  
Phylogenetic Analyses ◽  
Type Specimen ◽  
Morphological Characters ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Phylogenetic Position ◽  
Full Description ◽  
New Taxon ◽  
Internal Transcribed Spacer Region ◽  
Se Turkey

Crocus musagecitii is described as a new species. Diagnostic morphological characters, a full description and detailed illustrations are provided on the basis of the type specimen and wild specimens. Morphologically, C. musagecitii is close to Crocus biflorus subsp. pseudonubigena. Crocus musagecitii differs from C. biflorus subsp. pseudonubigena by the lack of stripes or narrow purplish tongue on outside of outer tepals, wider tepals, and homogenously yellow anthers. In order to clarify the phylogenetic position of this species within the Crocus adamii species complex, we sequenced the internal transcribed spacer region (ITS: ITS1 + 5.8SrDNA + ITS2) and 5’ external transcribed spacer (ETS) of the nuclear ribosomal DNA (rDNA). A phylogenetic tree obtained by Bayesian phylogenetic inference is given. Phylogenetic analyses revealed that the new taxon is close to C. munzurensis. Crocus musagecitii differs from its phylogenetically closest relative C. munzurensis by the corm tunics (C. musagecitii: coriaceus; C. munzurensis: membranous), the number of leaves (C. musagecitii: up to 8; C. munzurensis: up to 4) and non-hairy leaf margins.

scholarly journals Oldest cingulate skulls provide congruence between morphological and molecular scenarios of armadillo evolution

2011 ◽  
Vol 278 (1719) ◽  
pp. 2791-2797 ◽  
Author(s):  
Guillaume Billet ◽  
Lionel Hautier ◽  
Christian de Muizon ◽  
Xavier Valentin
Keyword(s):  
Phylogenetic Analysis ◽  
Fossil Record ◽  
Phylogenetic Analyses ◽  
Typical Case ◽  
New Taxon ◽  
Late Oligocene ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
Early Neogene ◽  
Group A

The cingulates of the mammalian order Xenarthra present a typical case of disagreement between molecular and morphological phylogenetic studies. We report here the discovery of two new skulls from the Late Oligocene Salla Beds of Bolivia (approx. 26 Ma), which are the oldest known well-preserved cranial remains of the group. A new taxon is described: Kuntinaru boliviensis gen. et sp. nov. A phylogenetic analysis clusters K. boliviensis together with the armadillo subfamily Tolypeutinae. These skulls document an early spotty occurrence for the Tolypeutinae at 26 Ma, in agreement with the temporal predictions of previous molecular studies. The fossil record of tolypeutines is now characterized by a unique occurrence in the Late Oligocene, and a subsequent 12 Myr lack in the fossil record. It is noteworthy that the tolypeutines remain decidedly marginal in the Late Palaeogene and Early Neogene deposits, whereas other cingulate groups diversify. Also, the anatomical phylogenetic analysis herein, which includes K. boliviensis , is congruent with recent molecular phylogenetic analyses. Kuntinaru boliviensis is the oldest confident calibration point available for the whole Cingulata.

scholarly journals Osteology of the Permian temnospondyl amphibian <i>Glanochthon lellbachae</i> and its relationships

Fossil Record ◽  
2021 ◽  
Vol 24 (1) ◽  
pp. 49-64
Author(s):  
Rainer R. Schoch
Keyword(s):  
Phylogenetic Analysis ◽  
Lateral Margin ◽  
Sister Taxon ◽  
Time Interval ◽  
New Taxon ◽  
Early Permian ◽  
Apex Predators ◽  
Trophic Guild ◽  
Long Time ◽  
Registration Date

Abstract. The early Permian Meisenheim Formation of the Saar–Nahe Basin (Germany) is famous for its richness in vertebrate fossils, among which the temnospondyls were present with microvores and fish-eating apex predators. The latter trophic guild was occupied exclusively by the genus Sclerocephalus in that basin within a long time interval up to M8, whereas in M9, a new taxon, Glanochthon lellbachae, appeared. This taxon is defined by (1) a preorbital region 1.8–2.0 times as long as the postorbital skull table, (2) dermal ornament with tall radial ridges, (3) a prefrontal anteriorly wider with straight lateral margin, (4) a squamosal posteriorly only half as wide as the quadratojugal, (5) phalanges of manus and pes long and gracile, (6) carpals unossified in adults, and (7) tail substantially longer than skull and trunk combined. Phylogenetic analysis finds that G. lellbachae forms the basal sister taxon of the stratigraphically younger G. angusta and G. latirostre and that this clade nests within the paraphyletic taxon Sclerocephalus, with S. nobilis forming the sister taxon of the genus Glanochthon (urn:lsid:zoobank.org:act:3038F794-17B9-4FCA-B241-CCC3F4423651; registration date: 15 March 2021).

scholarly journals Aliivibrio finisterrensis sp. nov., isolated from Manila clam, Ruditapes philippinarum and emended description of the genus Aliivibrio

2010 ◽  
Vol 60 (1) ◽  
pp. 223-228 ◽  
Author(s):  
Roxana Beaz-Hidalgo ◽  
Alejandra Doce ◽  
Sabela Balboa ◽  
Juan L. Barja ◽  
Jesús L. Romalde
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Reca Protein ◽  
Ruditapes Philippinarum ◽  
Manila Clam ◽  
Rrna Gene ◽  
Western Coast ◽  
Phenotypic Data ◽  
The North ◽  
Ump Kinase

Four strains isolated from cultured Manila clam, Ruditapes philippinarum, in the north-western coast of Spain were characterized phenotypically and genotypically. Phylogenetic analyses based on the 16S rRNA gene sequences indicated that these bacteria were closely related to Aliivibrio wodanis, Aliivibrio salmonicida, Aliivibrio fischeri and Aliivibrio logei with sequence similarities between 98.1 and 96.0 %. Phylogenetic analysis based on the RNA polymerase alpha chain (rpoA), RecA protein (recA), the α-subunit of bacterial ATP synthase (atpA) and the uridine monophosphate (UMP) kinase (pyrH) genes and fluorescent amplified fragment length polymorphism experiments clearly showed that these novel isolates form a tight genomic group different from any currently known Aliivibrio species. On the basis of phylogenetic analysis and phenotypic data, the four strains represent a novel taxon, for which the name Aliivibrio finisterrensis sp. nov. is proposed. Several phenotypic features were revealed that discriminate A. finisterrensis from other Aliivibrio species. The type strain is CMJ 11.1T (=CECT 7228T=LMG 23869T).

scholarly journals A new large-bodied Pliocene seal with unusual cutting teeth

2020 ◽  
Vol 7 (11) ◽  
pp. 201591
Author(s):  
James P. Rule ◽  
Justin W. Adams ◽  
Douglass S. Rovinsky ◽  
David P. Hocking ◽  
Alistair R. Evans ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
North Atlantic ◽  
Taxonomic Status ◽  
Diagnostic Value ◽  
New Taxon ◽  
Ancestral State ◽  
The North ◽  
Body Sizes ◽  
The Usa ◽  
The North Atlantic

Today, monachine seals display the largest body sizes in pinnipeds. However, the evolution of larger body sizes has been difficult to assess due to the murky taxonomic status of fossil seals, including fossils referred to Callophoca obscura , a species thought to be present on both sides of the North Atlantic during the Neogene. Several studies have recently called into question the taxonomic validity of these fossils, especially those from the USA, as the fragmentary lectotype specimen from Belgium is of dubious diagnostic value. We find that the lectotype isolated humerus of C. obscura is too uninformative; thus, we designate C. obscura as a nomen dubium. More complete cranial and postcranial specimens from the Pliocene Yorktown Formation are described as a new taxon, Sarcodectes magnus . The cranial specimens display adaptations towards an enhanced ability to cut or chew prey that are unique within Phocidae, and estimates indicate S. magnus to be around 2.83 m in length. A parsimony phylogenetic analysis found S. magnus is a crown monachine. An ancestral state estimation of body length indicates that monachines did not have a remarkable size increase until the evolution of the lobodontins and miroungins.

scholarly journals Outbreak of Chikungunya virus in the north Caribbean area of Colombia: clinical presentation and phylogenetic analysis

2015 ◽  
Vol 9 (10) ◽  
pp. 1126-1132 ◽  
Author(s):  
Salim Mattar ◽  
Jorge Miranda ◽  
Hernando Pinzon ◽  
Vanesa Tique ◽  
Amada Bolanos ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Chikungunya Virus ◽  
Phylogenetic Analyses ◽  
Disease Onset ◽  
Virgin Islands ◽  
Lower Limbs ◽  
Enzyme Linked Immunosorbent Assay ◽  
British Virgin Islands ◽  
The North ◽  
Caribbean Area

Introduction: The Caribbean area of Colombia has been severely affected by a Chikungunya virus (CHIKV) outbreak since 2014. Methodology: The study was carried out on 100 patients during a fever outbreak from August to September 2014 in two small rural villages in the northern Caribbean area of Colombia. The molecular assays performed by reverse transcription polymerase chain reaction (RT-PCR) on acute patient sera were collected within one to five days of the appearance of symptoms. Sequence analyses were carried out based on phylogenetic analyses of genes NS1 and E2. For serological assays, 49 (49%) patients at ≥ 6 days of disease onset were tested with NovaLisa Chikungunya IgG/IgM μ-capture enzyme-linked immunosorbent assay (ELISA). Results: The main signs or symptoms associated with Chikungunya infection were arthralgia of the lower limbs (96%), fever (91%), arthralgia of the upper limbs (85%), rash (64%), and headache (57%). Ninety-four percent (46/49) of patients were positive for either IgM or IgG; the remaining three (6%) patients were seronegative. Viral loads were detected in 25 patients. Based on phylogenetic analysis of NS1 and E2, the characterization of the Colombian CHIKV indicated that it was a strain closely related to the British Virgin Islands strain and to the Asian genotype. Conclusions: This study shows the phylogenetic and clinical description of CHIKV in Colombia. The main symptoms shown were: arthralgia, fever, and rash. CHIKV sequences detected in Colombian patients were within the Asian genotype and closely related to the British Virgin Islands strain.

Meloscaphander grandis (Heterobranchia: Cephalaspidea), a deep-water species from the North Pacific: Redescription and taxonomic remarks

Zootaxa ◽  
2019 ◽  
Vol 4646 (2) ◽  
pp. 385-400 ◽  
Author(s):  
ELENA M. CHABAN ◽  
IRINA A. EKIMOVA ◽  
DIMITRY M. SCHEPETOV ◽  
ALEXEI V. CHERNYSHEV
Keyword(s):  
Phylogenetic Analysis ◽  
Taxonomic Revision ◽  
Type Specimen ◽  
Molecular Data ◽  
Taxonomic Analysis ◽  
The North ◽  
Deep Water Species ◽  
Morphological Differences ◽  
The North Pacific ◽  
Water Species

Meloscaphander grandis is a little-known species missing from databases and papers on taxonomic revision and phylogenetic analysis of Scaphandridae. This species is redescribed herein, based on the type specimen and specimens from the abyssal plain adjacent to the Kuril-Kamchatka Trench. A phylogenetic analysis of COI, 16S, and 28S markers show M. grandis to nest within the Scaphander clade. Additionally, Scaphander lignarius and S. bathymophilus are suggested to be a complex of cryptic species. Morphological differences between the genera Meloscaphander and Scaphander are of dubious significance and, when coupled with molecular data, give a strong reason for reconsidering Meloscaphander as a junior synonym of Scaphander. Thus, according to an integrative taxonomic analysis, Meloscaphander grandis has been transferred to the genus Scaphander. The diagnosis of the genus Scaphander is expanded. We propose new combinations as follows: Scaphander grandis (Minichev, 1967) comb. n. for Meloscaphander grandis, Scaphander sibogae (Schepman, 1913) comb. n. for Meloscaphander sibogae, and Scaphander imperceptus (Bouchet, 1975) comb. n. for Meloscaphander imperceptus. Due to the homonymy of Scaphander sibogae Schepman, 1913 (with a sunken spire) and Scaphander sibogae (Schepman, 1913) comb. n. (with an elevated spire), the name S. attenuatus Schepman, 1913 becomes valid for the former species (with a sunken spire). 

scholarly journals Seifertia shangrilaensis sp. nov. (Melanommataceae), a new species from Southwest China

Phytotaxa ◽  
2016 ◽  
Vol 273 (1) ◽  
pp. 34 ◽  
Author(s):  
JUNFU LI ◽  
RUNGTIWA PHOOKAMSAK ◽  
AUSANA MAPOOK ◽  
SARANYAPHAT BOONMEE ◽  
JARAYAMA D. BHAT ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Type Species ◽  
Yunnan Province ◽  
Southwest China ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
New Taxon ◽  
A New Species

A new Seifertia species was isolated from hanging rachides of Rhododendron decorum in Yunnan Province, Southwest China. The new taxon was compared with the type species, S. azalea and differs in having wider conidiophores, with hyaline to subhyaline and smaller conidia, while S. azalea has olive-brown to brown, rarely branched conidiophores, and pale brown or olive-brown, very rarely septate conidia. Phylogenetic analyses of combined LSU, SSU and TEF1-α sequence data show that S. shangrilaensis forms a robust clade with S. azalea nested among the species of Melanommataceae in the order Pleosporales. A new species, S. shangrilaensis is introduced in this study, and Seifertia should be placed in Melanommataceae (Pleosporales, Dothideomycetes) based on phylogenetic analysis. Description and illustration of Seifertia shangrilaensis are provided with notes and its introduction is supported by molecular data.

Referral of Miacis jepseni Guthrie to Oödectes Wortman, and an assessment of phylogenetic relationships among early Eocene Miacidae (Mammalia: Carnivora)

1997 ◽  
Vol 71 (6) ◽  
pp. 1172-1178 ◽  
Author(s):  
Ronald E. Heinrich
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationship ◽  
Phylogenetic Relationships ◽  
Sister Taxon ◽  
Evolutionary Relationships ◽  
Early Eocene ◽  
Relationship Of ◽  
Early Cenozoic

A phylogenetic analysis was conducted to address evolutionary relationships among the earliest members of the Miacidae (one of two early Cenozoic carnivoran families) and to ascertain the position of an ambiguous taxon, “Miacis” jepseni, with respect to the genera Miacis, Uintacyon, Vulpavus, Vassacyon, and Oödectes. The results of this analysis indicate that “Miacis” jepseni should be referred to the genus Oödectes, and both genus and currently included species are rediagnosed. The phylogenetic relationship of Oödectes to other miacids, and relationships among early Eocene miacids more generally, however, are less well resolved. Support is found for sister taxon relationships between Miacis and Vulpavus and between Uintacyon and Vassacyon, and it is suggested that this latter clade is the sister taxon to all other members of Miacidae.

A new ceratopsid from the Foremost Formation (middle Campanian) of Alberta

2012 ◽  
Vol 49 (10) ◽  
pp. 1251-1262 ◽  
Author(s):  
Michael J. Ryan ◽  
David C. Evans ◽  
Kieran M. Shepherd
Keyword(s):  
Phylogenetic Analysis ◽  
Type Species ◽  
New Genus ◽  
Sister Taxon ◽  
Low Density ◽  
New Taxon

Xenoceratops foremostensis gen. et. sp. nov., a new centrosaurine ceratopsid from the Foremost Formation (Campanian) of Alberta, is described based on frill material from at least three adult-sized individuals collected from a low-density bone bed. The material can be assigned to Centrosaurinae based on features of the preserved squamosal. Although the parietals are incomplete, the shape of the diagnostic parietal can be inferred from several overlapping serial elements. The parietal of the new taxon shares with all other centrosaurines, except Centrosaurus apertus , spike-like ornamentation at the posterolateral (P3) locus under traditional coding methods. At approximately 78 Ma, it is the oldest known Canadian ceratopsid, approximately 0.5 Ma older than Albertaceratops from the lower Oldman Formation of Canada and approximately 1.0 Ma younger than Diabloceratops from the Wahweap Formation of Utah. A phylogenetic analysis resolves the new taxon as the basalmost centrosaurine and places Centrosaurus brinkmani as the sister taxon to Styracosaurus albertensis . The type species of Centrosaurus brinkmani is moved to a new genus.

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