scholarly journals KAT4IA: K-Means Assisted Training for Image Analysis of Field-Grown Plant Phenotypes

2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Xingche Guo ◽  
Yumou Qiu ◽  
Dan Nettleton ◽  
Cheng-Ting Yeh ◽  
Zihao Zheng ◽  
...  
Keyword(s):  
Plant Traits ◽  
Semisupervised Learning ◽  
Training Data ◽  
Transform Domain ◽  
Neural Network Learning ◽  
Plant Trait ◽  
Novel Approach ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Rich Data

High-throughput phenotyping enables the efficient collection of plant trait data at scale. One example involves using imaging systems over key phases of a crop growing season. Although the resulting images provide rich data for statistical analyses of plant phenotypes, image processing for trait extraction is required as a prerequisite. Current methods for trait extraction are mainly based on supervised learning with human labeled data or semisupervised learning with a mixture of human labeled data and unsupervised data. Unfortunately, preparing a sufficiently large training data is both time and labor-intensive. We describe a self-supervised pipeline (KAT4IA) that uses K-means clustering on greenhouse images to construct training data for extracting and analyzing plant traits from an image-based field phenotyping system. The KAT4IA pipeline includes these main steps: self-supervised training set construction, plant segmentation from images of field-grown plants, automatic separation of target plants, calculation of plant traits, and functional curve fitting of the extracted traits. To deal with the challenge of separating target plants from noisy backgrounds in field images, we describe a novel approach using row-cuts and column-cuts on images segmented by transform domain neural network learning, which utilizes plant pixels identified from greenhouse images to train a segmentation model for field images. This approach is efficient and does not require human intervention. Our results show that KAT4IA is able to accurately extract plant pixels and estimate plant heights.

scholarly journals Automatic Traits Extraction and Fitting for Field High-throughput Phenotyping Systems

2020 ◽  
Author(s):  
Xingche Guo ◽  
Yumou Qiu ◽  
Dan Nettleton ◽  
Cheng-Ting Yeh ◽  
Zihao Zheng ◽  
...  
Keyword(s):  
High Throughput ◽  
Large Scale ◽  
Plant Traits ◽  
Network Models ◽  
Modern Technology ◽  
Neural Network Models ◽  
Novel Approach ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Rich Data

ABSTRACTHigh-throughput phenotyping is a modern technology to measure plant traits efficiently and in large scale by imaging systems over the whole growth season. Those images provide rich data for statistical analysis of plant phenotypes. We propose a pipeline to extract and analyze the plant traits for field phenotyping systems. The proposed pipeline include the following main steps: plant segmentation from field images, automatic calculation of plant traits from the segmented images, and functional curve fitting for the extracted traits. To deal with the challenging problem of plant segmentation for field images, we propose a novel approach on image pixel classification by transform domain neural network models, which utilizes plant pixels from greenhouse images to train a segmentation model for field images. Our results show the proposed procedure is able to accurately extract plant heights and is more stable than results from Amazon Turks, who manually measure plant heights from original images.

scholarly journals High-Throughput Field-Phenotyping Tools for Plant Breeding and Precision Agriculture

Agronomy ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. 258 ◽  
Author(s):  
Aakash Chawade ◽  
Joost van Ham ◽  
Hanna Blomquist ◽  
Oscar Bagge ◽  
Erik Alexandersson ◽  
...  
Keyword(s):  
Plant Breeding ◽  
High Throughput ◽  
Precision Agriculture ◽  
Plant Traits ◽  
Early Stage ◽  
Plant Phenotyping ◽  
Plant Cultivation ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Major Attention

High-throughput field phenotyping has garnered major attention in recent years leading to the development of several new protocols for recording various plant traits of interest. Phenotyping of plants for breeding and for precision agriculture have different requirements due to different sizes of the plots and fields, differing purposes and the urgency of the action required after phenotyping. While in plant breeding phenotyping is done on several thousand small plots mainly to evaluate them for various traits, in plant cultivation, phenotyping is done in large fields to detect the occurrence of plant stresses and weeds at an early stage. The aim of this review is to highlight how various high-throughput phenotyping methods are used for plant breeding and farming and the key differences in the applications of such methods. Thus, various techniques for plant phenotyping are presented together with applications of these techniques for breeding and cultivation. Several examples from the literature using these techniques are summarized and the key technical aspects are highlighted.

scholarly journals Review: Application of Artificial Intelligence in Phenomics

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4363
Author(s):  
Shona Nabwire ◽  
Hyun-Kwon Suh ◽  
Moon S. Kim ◽  
Insuck Baek ◽  
Byoung-Kwan Cho
Keyword(s):  
Artificial Intelligence ◽  
Deep Learning ◽  
Data Collection ◽  
New Technologies ◽  
Plant Traits ◽  
Imaging Techniques ◽  
Plant Phenotyping ◽  
Plant Phenomics ◽  
Field Phenotyping ◽  
High Throughput Phenotyping

Plant phenomics has been rapidly advancing over the past few years. This advancement is attributed to the increased innovation and availability of new technologies which can enable the high-throughput phenotyping of complex plant traits. The application of artificial intelligence in various domains of science has also grown exponentially in recent years. Notably, the computer vision, machine learning, and deep learning aspects of artificial intelligence have been successfully integrated into non-invasive imaging techniques. This integration is gradually improving the efficiency of data collection and analysis through the application of machine and deep learning for robust image analysis. In addition, artificial intelligence has fostered the development of software and tools applied in field phenotyping for data collection and management. These include open-source devices and tools which are enabling community driven research and data-sharing, thereby availing the large amounts of data required for the accurate study of phenotypes. This paper reviews more than one hundred current state-of-the-art papers concerning AI-applied plant phenotyping published between 2010 and 2020. It provides an overview of current phenotyping technologies and the ongoing integration of artificial intelligence into plant phenotyping. Lastly, the limitations of the current approaches/methods and future directions are discussed.

scholarly journals Autonomous flight cycles and extreme landings of airliners beyond the current limits and capabilities using artificial neural networks

2021 ◽  
Author(s):  
Haitham Baomar ◽  
Peter J. Bentley
Keyword(s):  
Neural Networks ◽  
Artificial Neural Networks ◽  
Weather Conditions ◽  
Extreme Weather ◽  
Training Data ◽  
Aviation Industry ◽  
Control Models ◽  
Novel Approach ◽  
Network Modules ◽  
Artificial Neural

AbstractWe describe the Intelligent Autopilot System (IAS), a fully autonomous autopilot capable of piloting large jets such as airliners by learning from experienced human pilots using Artificial Neural Networks. The IAS is capable of autonomously executing the required piloting tasks and handling the different flight phases to fly an aircraft from one airport to another including takeoff, climb, cruise, navigate, descent, approach, and land in simulation. In addition, the IAS is capable of autonomously landing large jets in the presence of extreme weather conditions including severe crosswind, gust, wind shear, and turbulence. The IAS is a potential solution to the limitations and robustness problems of modern autopilots such as the inability to execute complete flights, the inability to handle extreme weather conditions especially during approach and landing where the aircraft’s speed is relatively low, and the uncertainty factor is high, and the pilots shortage problem compared to the increasing aircraft demand. In this paper, we present the work done by collaborating with the aviation industry to provide training data for the IAS to learn from. The training data is used by Artificial Neural Networks to generate control models automatically. The control models imitate the skills of the human pilot when executing all the piloting tasks required to pilot an aircraft between two airports. In addition, we introduce new ANNs trained to control the aircraft’s elevators, elevators’ trim, throttle, flaps, and new ailerons and rudder ANNs to counter the effects of extreme weather conditions and land safely. Experiments show that small datasets containing single demonstrations are sufficient to train the IAS and achieve excellent performance by using clearly separable and traceable neural network modules which eliminate the black-box problem of large Artificial Intelligence methods such as Deep Learning. In addition, experiments show that the IAS can handle landing in extreme weather conditions beyond the capabilities of modern autopilots and even experienced human pilots. The proposed IAS is a novel approach towards achieving full control autonomy of large jets using ANN models that match the skills and abilities of experienced human pilots and beyond.

scholarly journals High-Throughput Phenotyping Methods for Breeding Drought-Tolerant Crops

2021 ◽  
Vol 22 (15) ◽  
pp. 8266
Author(s):  
Minsu Kim ◽  
Chaewon Lee ◽  
Subin Hong ◽  
Song Lim Kim ◽  
Jeong-Ho Baek ◽  
...  
Keyword(s):  
Drought Stress ◽  
High Throughput ◽  
Large Scale ◽  
Crop Yields ◽  
Plant Traits ◽  
Rapid Development ◽  
Plant Responses ◽  
Phenotypic Data ◽  
Agricultural Technologies ◽  
High Throughput Phenotyping

Drought is a main factor limiting crop yields. Modern agricultural technologies such as irrigation systems, ground mulching, and rainwater storage can prevent drought, but these are only temporary solutions. Understanding the physiological, biochemical, and molecular reactions of plants to drought stress is therefore urgent. The recent rapid development of genomics tools has led to an increasing interest in phenomics, i.e., the study of phenotypic plant traits. Among phenomic strategies, high-throughput phenotyping (HTP) is attracting increasing attention as a way to address the bottlenecks of genomic and phenomic studies. HTP provides researchers a non-destructive and non-invasive method yet accurate in analyzing large-scale phenotypic data. This review describes plant responses to drought stress and introduces HTP methods that can detect changes in plant phenotypes in response to drought.

Referencing laser and ultrasonic height measurements of barleycultivars by using a herbometre as standard

2016 ◽  
Vol 67 (12) ◽  
pp. 1215 ◽  
Author(s):  
Gero Barmeier ◽  
Bodo Mistele ◽  
Urs Schmidhalter
Keyword(s):  
Plant Height ◽  
Spring Barley ◽  
Operating Time ◽  
Reference Method ◽  
Fold Increase ◽  
Barley Cultivars ◽  
Coefficients Of Variation ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Distance Sensor

Assessment of plant height is an important factor for agronomic and breeder decisions; however, current field phenotyping, such as visual scoring or using a ruler, is time consuming, labour intensive, costly and subjective. For agronomists and plant breeders, the most common method used to measure plant height is still a meter stick. In a 3-year study, we have adopted a herbometre similar to a rising plate meter as a reference method to obtain the weighted plant height of barley cultivars and to evaluate vehicle-based ultrasonic and laser distance sensors. Sets of 30 spring barley cultivars and 14 and 60 winter barley cultivars were tested in 2013, 2014 and 2015, respectively. The herbometre was well suited as a reference method allowing for an increased area and was easy to handle. The herbometre measurements within a plot showed very low coefficients of variation. Good and close relationships (R2 = 0.59, 0.76, 0.80) between the herbometre and the ultrasonic distance sensor measurements were observed in the years 2013, 2014 and 2015, respectively, demonstrating also increased values of heritability. Hence, both sensors were able to differentiate among barley cultivars in standard breeding trials. For the sensors, we observed a 4-fold faster operating time and 6-fold increase of measurement points compared with the herbometre measurement. Based on these results, we conclude that distance sensors represent a powerful and economical high-throughput phenotyping tool for breeders and plant scientists to estimate plant height and to differentiate cultivars for agronomic decisions and breeding activities potentially being also applicable in other small grain cereals with dense crop stands. Particularly, ultrasonic distance sensors may reflect an agronomically and physiologically relevant plant height information.

scholarly journals Removal of Cochannel Interference Using Probabilistic Latent Component Analysis in Passive Bistatic Radar

2021 ◽  
Vol 2021 ◽  
pp. 1-10
Author(s):  
Tao Ying ◽  
Xuebao Wang ◽  
Wei Tian ◽  
Cheng Zhou
Keyword(s):  
Target Detection ◽  
Reference Signal ◽  
Component Analysis ◽  
Cochannel Interference ◽  
Training Data ◽  
Bistatic Radar ◽  
Frequency Channel ◽  
Novel Approach ◽  
Passive Bistatic Radar

This paper examines the problem of cancellation of cochannel interference (CCI) present in the same frequency channel as the signal of interest, which may bring a reduction in the performance of target detection, in passive bistatic radar. We propose a novel approach based on probabilistic latent component analysis for CCI removal. The highlight is that removing CCI is considered as reconstruction, and extraction of Doppler-shifted and time-delayed replicas of the reference signal exploited fully as training data. The results of the simulation show that the developed method is effective.

scholarly journals Discovering Latent Class Labels for Multi-Label Learning

2020 ◽  
Author(s):  
Jun Huang ◽  
Linchuan Xu ◽  
Jing Wang ◽  
Lei Feng ◽  
Kenji Yamanishi
Keyword(s):  
Large Scale ◽  
Latent Class ◽  
Training Data ◽  
Data Sets ◽  
Robust Learning ◽  
Large Scale Data ◽  
Novel Approach ◽  
Fixed Set ◽  
Class Labels ◽  
Scale Data

Existing multi-label learning (MLL) approaches mainly assume all the labels are observed and construct classification models with a fixed set of target labels (known labels). However, in some real applications, multiple latent labels may exist outside this set and hide in the data, especially for large-scale data sets. Discovering and exploring the latent labels hidden in the data may not only find interesting knowledge but also help us to build a more robust learning model. In this paper, a novel approach named DLCL (i.e., Discovering Latent Class Labels for MLL) is proposed which can not only discover the latent labels in the training data but also predict new instances with the latent and known labels simultaneously. Extensive experiments show a competitive performance of DLCL against other state-of-the-art MLL approaches.

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