scholarly journals Review: Application of Artificial Intelligence in Phenomics

Sensors ◽  
2021 ◽  
Vol 21 (13) ◽  
pp. 4363
Author(s):  
Shona Nabwire ◽  
Hyun-Kwon Suh ◽  
Moon S. Kim ◽  
Insuck Baek ◽  
Byoung-Kwan Cho
Keyword(s):  
Artificial Intelligence ◽  
Deep Learning ◽  
Data Collection ◽  
New Technologies ◽  
Plant Traits ◽  
Imaging Techniques ◽  
Plant Phenotyping ◽  
Plant Phenomics ◽  
Field Phenotyping ◽  
High Throughput Phenotyping

Plant phenomics has been rapidly advancing over the past few years. This advancement is attributed to the increased innovation and availability of new technologies which can enable the high-throughput phenotyping of complex plant traits. The application of artificial intelligence in various domains of science has also grown exponentially in recent years. Notably, the computer vision, machine learning, and deep learning aspects of artificial intelligence have been successfully integrated into non-invasive imaging techniques. This integration is gradually improving the efficiency of data collection and analysis through the application of machine and deep learning for robust image analysis. In addition, artificial intelligence has fostered the development of software and tools applied in field phenotyping for data collection and management. These include open-source devices and tools which are enabling community driven research and data-sharing, thereby availing the large amounts of data required for the accurate study of phenotypes. This paper reviews more than one hundred current state-of-the-art papers concerning AI-applied plant phenotyping published between 2010 and 2020. It provides an overview of current phenotyping technologies and the ongoing integration of artificial intelligence into plant phenotyping. Lastly, the limitations of the current approaches/methods and future directions are discussed.

scholarly journals High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat

2019 ◽  
Author(s):  
Xu Wang ◽  
Hong Xuan ◽  
Byron Evers ◽  
Sandesh Shrestha ◽  
Robert Pless ◽  
...  
Keyword(s):  
Deep Learning ◽  
Flowering Time ◽  
High Throughput ◽  
Developmental Stages ◽  
Expert Knowledge ◽  
Plant Traits ◽  
Plant Morphology ◽  
Ground Truth ◽  
Plant Phenotyping ◽  
High Throughput Phenotyping

ABSTRACTBackgroundPrecise measurement of plant traits with precision and speed on large populations has emerged as a critical bottleneck in connecting genotype to phenotype in genetics and breeding. This bottleneck limits advancements in understanding plant genomes and the development of improved, high-yielding crop varieties.ResultsHere we demonstrate the application of deep learning on proximal imaging from a mobile field vehicle to directly score plant morphology and developmental stages in wheat under field conditions. We developed and trained a convolutional neural network with image datasets labeled from expert visual scores and used this ‘breeder-trained’ network to directly score wheat morphology and developmental stages. For both morphological (awned) and phenological (flowering time) traits, we demonstrate high heritability and extremely high accuracy against the ‘ground-truth’ values from visual scoring. Using the traits scored by the network, we tested genotype-to-phenotype association using the deep learning phenotypes and uncovered novel epistatic interactions for flowering time. Enabled by the time-series high-throughput phenotyping, we describe a new phenotype as the rate of flowering and show heritable genetic control.ConclusionsWe demonstrated a field-based high-throughput phenotyping approach using deep learning that can directly score morphological and developmental phenotypes in genetic populations. Most powerfully, the deep learning approach presented here gives a conceptual advancement in high-throughput plant phenotyping as it can potentially score any trait in any plant species through leveraging expert knowledge from breeders, geneticist, pathologists and physiologists.

scholarly journals High-Throughput Field-Phenotyping Tools for Plant Breeding and Precision Agriculture

Agronomy ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. 258 ◽  
Author(s):  
Aakash Chawade ◽  
Joost van Ham ◽  
Hanna Blomquist ◽  
Oscar Bagge ◽  
Erik Alexandersson ◽  
...  
Keyword(s):  
Plant Breeding ◽  
High Throughput ◽  
Precision Agriculture ◽  
Plant Traits ◽  
Early Stage ◽  
Plant Phenotyping ◽  
Plant Cultivation ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Major Attention

High-throughput field phenotyping has garnered major attention in recent years leading to the development of several new protocols for recording various plant traits of interest. Phenotyping of plants for breeding and for precision agriculture have different requirements due to different sizes of the plots and fields, differing purposes and the urgency of the action required after phenotyping. While in plant breeding phenotyping is done on several thousand small plots mainly to evaluate them for various traits, in plant cultivation, phenotyping is done in large fields to detect the occurrence of plant stresses and weeds at an early stage. The aim of this review is to highlight how various high-throughput phenotyping methods are used for plant breeding and farming and the key differences in the applications of such methods. Thus, various techniques for plant phenotyping are presented together with applications of these techniques for breeding and cultivation. Several examples from the literature using these techniques are summarized and the key technical aspects are highlighted.

FinTech Adoption in China

2021 ◽  
pp. 166-173
Author(s):  
Gagan Kukreja
Keyword(s):  
Artificial Intelligence ◽  
Machine Learning ◽  
Deep Learning ◽  
Financial Services ◽  
New Technologies ◽  
Large Population ◽  
Financial Inclusion ◽  
High Penetration ◽  
Digital Payments ◽  
Almost All

Almost all financial services (especially digital payments) in China are affected by new innovations and technologies. New technologies such as blockchain, artificial intelligence, machine learning, deep learning, and data analytics have immensely influenced all most all aspects of financial services such as deposits, transactions, billings, remittances, credits (B2B and P2P), underwriting, insurance, and so on. Fintech companies are enabling larger financial inclusion, changing in lifestyle and expenditure behavior, better and fast financial services, and lots more. This chapter covers the development, opportunities, and challenges of financial sectors because of new technologies in China. This chapter throws the light on opportunities that emerged because of the large population of 1.4 billion people, high penetration, and access to the latest and affordable technology, affordable cost of smartphones, and government policies and regulations. Lastly, this chapter portrays the untapped potentials of Fintech in China.

scholarly journals Advancements in Food Technology Using Artificial Intelligence- Deep Learning

2021 ◽  
pp. 1-9
Author(s):  
Viola A. Nwachukwu Nicholas-Okpara ◽  
Adaeze Joy Ubaka ◽  
Maryam Olanshile Adegboyega ◽  
Ifesinachi Anastacia Utazi ◽  
C. E. Chibudike ◽  
...  
Keyword(s):  
Artificial Intelligence ◽  
Deep Learning ◽  
Value Chain ◽  
Food Processing ◽  
Food Industry ◽  
New Technologies ◽  
Maximum Efficiency ◽  
Great Relevance ◽  
Increasing Demand ◽  
Efficiency And Productivity

The food industry has continued to evolve in terms of technologies employed in food processing. These advancements are because of increasing demand of food. Many industries are beginning to explore new technologies to enhance maximum efficiency and productivity across the food value chain. Artificial Intelligence (AI) is one of the emerging technologies that have found great relevance in the food sector. AI is simply the creation of smart machines capable of exhibiting human intelligence. This technology uses algorithms like machine learning and deep learning to mimic human behavior. AI has continued to find relevance in food processing and has proven to be an added advantage to the industry. In this article, we considered the relevance of AI to the food industry, its various applications in food processing, benefits, and setbacks to its adoption in the food industry.

scholarly journals Automatic Traits Extraction and Fitting for Field High-throughput Phenotyping Systems

2020 ◽  
Author(s):  
Xingche Guo ◽  
Yumou Qiu ◽  
Dan Nettleton ◽  
Cheng-Ting Yeh ◽  
Zihao Zheng ◽  
...  
Keyword(s):  
High Throughput ◽  
Large Scale ◽  
Plant Traits ◽  
Network Models ◽  
Modern Technology ◽  
Neural Network Models ◽  
Novel Approach ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Rich Data

ABSTRACTHigh-throughput phenotyping is a modern technology to measure plant traits efficiently and in large scale by imaging systems over the whole growth season. Those images provide rich data for statistical analysis of plant phenotypes. We propose a pipeline to extract and analyze the plant traits for field phenotyping systems. The proposed pipeline include the following main steps: plant segmentation from field images, automatic calculation of plant traits from the segmented images, and functional curve fitting for the extracted traits. To deal with the challenging problem of plant segmentation for field images, we propose a novel approach on image pixel classification by transform domain neural network models, which utilizes plant pixels from greenhouse images to train a segmentation model for field images. Our results show the proposed procedure is able to accurately extract plant heights and is more stable than results from Amazon Turks, who manually measure plant heights from original images.

scholarly journals Predicting Plant Growth from Time-Series Data Using Deep Learning

2021 ◽  
Vol 13 (3) ◽  
pp. 331
Author(s):  
Robail Yasrab ◽  
Jincheng Zhang ◽  
Polina Smyth ◽  
Michael P. Pound
Keyword(s):  
Time Series ◽  
Deep Learning ◽  
Plant Growth ◽  
Time Series Data ◽  
Plant Traits ◽  
Domain Adaptation ◽  
Series Data ◽  
Plant Phenotyping ◽  
Research Issues ◽  
Public Datasets

Phenotyping involves the quantitative assessment of the anatomical, biochemical, and physiological plant traits. Natural plant growth cycles can be extremely slow, hindering the experimental processes of phenotyping. Deep learning offers a great deal of support for automating and addressing key plant phenotyping research issues. Machine learning-based high-throughput phenotyping is a potential solution to the phenotyping bottleneck, promising to accelerate the experimental cycles within phenomic research. This research presents a study of deep networks’ potential to predict plants’ expected growth, by generating segmentation masks of root and shoot systems into the future. We adapt an existing generative adversarial predictive network into this new domain. The results show an efficient plant leaf and root segmentation network that provides predictive segmentation of what a leaf and root system will look like at a future time, based on time-series data of plant growth. We present benchmark results on two public datasets of Arabidopsis (A. thaliana) and Brassica rapa (Komatsuna) plants. The experimental results show strong performance, and the capability of proposed methods to match expert annotation. The proposed method is highly adaptable, trainable (transfer learning/domain adaptation) on different plant species and mutations.

scholarly journals KAT4IA: K-Means Assisted Training for Image Analysis of Field-Grown Plant Phenotypes

2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Xingche Guo ◽  
Yumou Qiu ◽  
Dan Nettleton ◽  
Cheng-Ting Yeh ◽  
Zihao Zheng ◽  
...  
Keyword(s):  
Plant Traits ◽  
Semisupervised Learning ◽  
Training Data ◽  
Transform Domain ◽  
Neural Network Learning ◽  
Plant Trait ◽  
Novel Approach ◽  
Field Phenotyping ◽  
High Throughput Phenotyping ◽  
Rich Data

High-throughput phenotyping enables the efficient collection of plant trait data at scale. One example involves using imaging systems over key phases of a crop growing season. Although the resulting images provide rich data for statistical analyses of plant phenotypes, image processing for trait extraction is required as a prerequisite. Current methods for trait extraction are mainly based on supervised learning with human labeled data or semisupervised learning with a mixture of human labeled data and unsupervised data. Unfortunately, preparing a sufficiently large training data is both time and labor-intensive. We describe a self-supervised pipeline (KAT4IA) that uses K-means clustering on greenhouse images to construct training data for extracting and analyzing plant traits from an image-based field phenotyping system. The KAT4IA pipeline includes these main steps: self-supervised training set construction, plant segmentation from images of field-grown plants, automatic separation of target plants, calculation of plant traits, and functional curve fitting of the extracted traits. To deal with the challenge of separating target plants from noisy backgrounds in field images, we describe a novel approach using row-cuts and column-cuts on images segmented by transform domain neural network learning, which utilizes plant pixels identified from greenhouse images to train a segmentation model for field images. This approach is efficient and does not require human intervention. Our results show that KAT4IA is able to accurately extract plant pixels and estimate plant heights.

Artificial Intelligence in Medicine

2021 ◽  
pp. 49-68
Author(s):  
Gia Merlo
Keyword(s):  
Artificial Intelligence ◽  
Machine Learning ◽  
Deep Learning ◽  
New Technologies ◽  
New Technology ◽  
Technological System ◽  
Medical Professionals ◽  
Human Intelligence ◽  
Connected Health ◽  
The Future

Disruptive forces are challenging the future of medicine. One of the key forces bringing change is the development of artificial intelligence (AI). AI is a technological system designed to perform tasks that are commonly associated with human intelligence and ability. Machine learning is a subset of AI, and deep learning is an aspect of machine learning. AI can be categorized as either applied or generalized. Machine learning is key to applied AI; it is dynamic and can become more accurate through processing different results. Other new technologies include blockchain, which allows for the storage of all of patients’ records to create a connected health ecosystem. Medical professionals ought to be willing to accept new technology, while also developing the skills that technology will not be able to replicate.

scholarly journals Recent Data Augmentation Strategies for Deep Learning in Plant Phenotyping and Their Significance

2020 ◽  
Author(s):  
Douglas Pinto Sampaio Gomes ◽  
Lihong Zheng
Keyword(s):  
Deep Learning ◽  
Data Augmentation ◽  
Plant Traits ◽  
Synthetic Data ◽  
Plant Phenotyping ◽  
Data Sets ◽  
Data Set ◽  
Augmentation Strategies ◽  
Augmentation Techniques ◽  
Benchmark Solutions

Plant phenotyping concerns the study of plant traits resulted from their interaction with their environment. Computer vision (CV) techniques represent promising, non-invasive approaches for related tasks such as leaf counting, defining leaf area, and tracking plant growth. Between potential CV techniques, deep learning has been prevalent in the last couple of years. Such an increase in interest happened mainly due to the release of a data set containing rosette plants that defined objective metrics to benchmark solutions. This paper discusses an interesting aspect of the recent best-performing works in this field: the fact that their main contribution comes from novel data augmentation techniques, rather than model improvements. Moreover, experiments are set to highlight the significance of data augmentation practices for limited data sets with narrow distributions. This paper intends to review the ingenious techniques to generate synthetic data to augment training and display evidence of their potential importance.

Sign in / Sign up

Export Citation Format

Share Document