scholarly journals Host Range Evolution of Potyviruses: A Global Phylogenetic Analysis

Viruses ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 111 ◽  
Author(s):  
Benoît Moury ◽  
Cécile Desbiez
Keyword(s):  
Phylogenetic Analysis ◽  
Host Range ◽  
Plant Species ◽  
Control Strategies ◽  
Ecological Factors ◽  
Plant Viruses ◽  
Range Data ◽  
Disease Emergence ◽  
Host Range Evolution ◽  
Ecological Mechanisms

Virus host range, i.e., the number and diversity of host species of viruses, is an important determinant of disease emergence and of the efficiency of disease control strategies. However, for plant viruses, little is known about the genetic or ecological factors involved in the evolution of host range. Using available genome sequences and host range data, we performed a phylogenetic analysis of host range evolution in the genus Potyvirus, a large group of plant RNA viruses that has undergone a radiative evolution circa 7000 years ago, contemporaneously with agriculture intensification in mid Holocene. Maximum likelihood inference based on a set of 59 potyviruses and 38 plant species showed frequent host range changes during potyvirus evolution, with 4.6 changes per plant species on average, including 3.1 host gains and 1.5 host loss. These changes were quite recent, 74% of them being inferred on the terminal branches of the potyvirus tree. The most striking result was the high frequency of correlated host gains occurring repeatedly in different branches of the potyvirus tree, which raises the question of the dependence of the molecular and/or ecological mechanisms involved in adaptation to different plant species.

scholarly journals Trade-offs in host range evolution of plant viruses

2013 ◽  
Vol 62 ◽  
pp. 2-9 ◽  
Author(s):  
F. García-Arenal ◽  
A. Fraile
Keyword(s):  
Host Range ◽  
Plant Viruses ◽  
Trade Offs ◽  
Host Range Evolution

scholarly journals Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions

2021 ◽  
Author(s):  
Quentin Lamy-Besnier ◽  
Bryan Brancotte ◽  
Hervé Ménager ◽  
Laurent Debarbieux
Keyword(s):  
Host Range ◽  
Source Code ◽  
Range Data ◽  
Web Based ◽  
Online Tool ◽  
Experimental Host ◽  
Living World ◽  
Host Interactions ◽  
Experimental Host Range ◽  
Viral Host Range

Abstract Motivation Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. Results We developed a web-based tool called the Viral Host Range database to record, analyze and disseminate experimental host range data for viruses infecting archaea, bacteria and eukaryotes. Availability The ViralHostRangeDB application is available from https://viralhostrangedb.pasteur.cloud. Its source code is freely available from the Gitlab hub of Institut Pasteur (https://gitlab.pasteur.fr/hub/viralhostrangedb).

scholarly journals Illuminating the Plant Rhabdovirus Landscape through Metatranscriptomics Data

Viruses ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 1304
Author(s):  
Nicolás Bejerman ◽  
Ralf G. Dietzgen ◽  
Humberto Debat
Keyword(s):  
Plant Species ◽  
High Throughput Sequencing ◽  
Plant Viruses ◽  
The Novel ◽  
Coding Regions ◽  
Public Data ◽  
Invaluable Tool ◽  
Sequencing Platforms ◽  
Viral Sequences ◽  
Plant Rhabdovirus

Rhabdoviruses infect a large number of plant species and cause significant crop diseases. They have a negative-sense, single-stranded unsegmented or bisegmented RNA genome. The number of plant-associated rhabdovirid sequences has grown in the last few years in concert with the extensive use of high-throughput sequencing platforms. Here, we report the discovery of 27 novel rhabdovirus genomes associated with 25 different host plant species and one insect, which were hidden in public databases. These viral sequences were identified through homology searches in more than 3000 plant and insect transcriptomes from the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) using known plant rhabdovirus sequences as the query. The identification, assembly and curation of raw SRA reads resulted in sixteen viral genome sequences with full-length coding regions and ten partial genomes. Highlights of the obtained sequences include viruses with unique and novel genome organizations among known plant rhabdoviruses. Phylogenetic analysis showed that thirteen of the novel viruses were related to cytorhabdoviruses, one to alphanucleorhabdoviruses, five to betanucleorhabdoviruses, one to dichorhaviruses and seven to varicosaviruses. These findings resulted in the most complete phylogeny of plant rhabdoviruses to date and shed new light on the phylogenetic relationships and evolutionary landscape of this group of plant viruses. Furthermore, this study provided additional evidence for the complexity and diversity of plant rhabdovirus genomes and demonstrated that analyzing SRA public data provides an invaluable tool to accelerate virus discovery, gain evolutionary insights and refine virus taxonomy.

scholarly journals Biological and Host Range Characteristics of Lysathia flavipes (Coleoptera: Chrysomelidae), a Candidate Biological Control Agent of Invasive Ludwigia spp. (Onagraceae) in the USA

Insects ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 471
Author(s):  
Angelica M. Reddy ◽  
Paul D. Pratt ◽  
Brenda J. Grewell ◽  
Nathan E. Harms ◽  
Ximena Cibils-Stewart ◽  
...  
Keyword(s):  
Biological Control ◽  
Host Range ◽  
Plant Species ◽  
Biocontrol Agent ◽  
Biological Control Agent ◽  
Control Agent ◽  
Native Plant ◽  
Native Plant Species ◽  
The Usa ◽  
Physical And Chemical

Exotic water primroses (Ludwigia spp.) are aggressive invaders in aquatic ecosystems worldwide. To date, management of exotic Ludwigia spp. has been limited to physical and chemical control methods. Biological control provides an alternative approach for the management of invasive Ludwigia spp. but little is known regarding the natural enemies of these exotic plants. Herein the biology and host range of Lysathia flavipes (Boheman), a herbivorous beetle associated with Ludwigia spp. in Argentina and Uruguay, was studied to determine its suitability as a biocontrol agent for multiple closely related target weeds in the USA. The beetle matures from egg to adult in 19.9 ± 1.4 days at 25 °C; females lived 86.3 ± 35.6 days and laid 1510.6 ± 543.4 eggs over their lifespans. No-choice development and oviposition tests were conducted using four Ludwigia species and seven native plant species. Lysathia flavipes showed little discrimination between plant species: larvae aggressively fed and completed development, and the resulting females (F1 generation) oviposited viable eggs on most plant species regardless of origin. These results indicate that L. flavipes is not sufficiently host-specific for further consideration as a biocontrol agent of exotic Ludwigia spp. in the USA and further testing is not warranted.

scholarly journals Highly Pathogenic Avian Influenza Clade 2.3.4.4b Subtype H5N8 Virus Isolated from Mandarin Duck in South Korea, 2020

Viruses ◽  
2020 ◽  
Vol 12 (12) ◽  
pp. 1389 ◽  
Author(s):  
Sol Jeong ◽  
Dong-Hun Lee ◽  
Jung-Hoon Kwon ◽  
Yu-Jin Kim ◽  
Sun-Hak Lee ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Avian Influenza ◽  
South Korea ◽  
Highly Pathogenic Avian Influenza ◽  
Control Strategies ◽  
Highly Pathogenic ◽  
Pathogenic Avian Influenza ◽  
H5n8 Virus ◽  
And Control ◽  
Comparative Phylogenetic Analysis

In October 2020, a highly pathogenic avian influenza (HPAI) subtype H5N8 virus was identified from a fecal sample of a wild mandarin duck (Aix galericulata) in South Korea. We sequenced all eight genome segments of the virus, designated as A/Mandarin duck/Korea/K20-551-4/2020(H5N8), and conducted genetic characterization and comparative phylogenetic analysis to track its origin. Genome sequencing and phylogenetic analysis show that the hemagglutinin gene belongs to H5 clade 2.3.4.4 subgroup B. All genes share high levels of nucleotide identity with H5N8 HPAI viruses identified from Europe during early 2020. Enhanced active surveillance in wild and domestic birds is needed to monitor the introduction and spread of HPAI via wild birds and to inform the design of improved prevention and control strategies.

Transmission characteristics and host range of the clover yellow edge agent

1976 ◽  
Vol 54 (11) ◽  
pp. 1171-1179 ◽  
Author(s):  
L.N. Chiykowski
Keyword(s):  
Host Range ◽  
Plant Species ◽  
Infected Plant ◽  
Transmission Characteristics

A disease of clover, designated as clover yellow edge (CYE), was transmitted by Aphrodes bicinctus (Schrank) but not by the leafhoppers Scaphytopius acutus (Say), Macrosteles fascifrons (Stal), Agallia constricta Van Duzee, and Agallia quadripunctata Prov. or a Cercopid sp. Transmission by A. bicinctus, given various acquisition access periods on infected clover as nymphs, increased from 29% for 1 day to 67% for 14 days for females and from 42% for 1 day to 72% for 14 days for males. When leafhoppers were given similar acquisition access periods as adults, transmission ranged from 5% for 1 day to 24% for 14 days for females and from 25% for 1 day to 33% for 14 days for males. Inoculative female leafhoppers, given inoculation access periods ranging from 0.5 h to 96 h, began transmitting with 1-h feeds (29%) and reached a maximum with 96-h feeds (88%). Inoculative males began transmitting with 8-h feeds (50%) and reached a maximum with 48-h feeds (83%), the longest time tested. The average preinfective period for female and male leafhoppers tested individually was 42.2 days and 40.1 days, respectively. Once an insect became inoculative, it continued to transmit until death.Of the 31 plant species in 12 families tested as hosts of the clover yellow edge agent (CYEA). 15 species in 6 families developed symptoms. The most commonly observed symptoms were chlorosis or yellowing of leaf margins and reduction in the size of flowers and leaves. Aphrodes bicinctus transmitted CYEA to clover from eight of eight infected plant species tested as source hosts.

Species composition and host range of fruit-infesting flies (Diptera: Tephritidae) in northern Ghana

2015 ◽  
Vol 35 (03) ◽  
pp. 137-151 ◽  
Author(s):  
K.B. Badii ◽  
M.K. Billah ◽  
K. Afreh-Nuamah ◽  
D. Obeng-Ofori
Keyword(s):  
Host Range ◽  
Plant Species ◽  
Host Plants ◽  
Management Strategies ◽  
Fruit Fly ◽  
Fruit Flies ◽  
Northern Ghana ◽  
Accurate Information ◽  
Wild Host ◽  
Fruit Samples

An important aspect of fruit fly management is accurate information on the species and their host spectrum. Studies were conducted between October 2011 and September 2013 to determine the host range and species diversity of pest fruit flies in the northern savannah ecology of Ghana. Fruit samples from 80 potential host plants (wild and cultivated) were collected and incubated for fly emergence; 65 (81.5%) of the plant species were positive to fruit flies. From records in Africa, 11 plant species were reported to be new hosts to the African invader fly,Bactrocera invadens(Drew, Tsuruta and White, 2005). This study documented the first records ofDacus ciliatus(Loew) andTrirhithrum nigerrimum(Bezzi) in northern Ghana although both species have been previously reported in other parts of the country. Infestation byB. invadenswas higher in the cultivated fruits;Ceratitis cosyradominated in most wild fruits. Cucurbitaceae were mainly infested by three species ofDacusandBactroceracucurbitae, a specialized cucurbit feeder. Among the commercial fruit species, the highest infestations were observed in mango, tomato, sweet pepper and watermelon, whereas marula plum, soursop, tropical almond, sycamore fig, African peach, shea nut, persimmon, icacina and albarillo dominated the wild host flora. The widespread availability of host plants and the incidence of diverse fly species in the ecology call for particular attention to their impact on commercial fruits and the development of sustainable management strategies against these economically important pests in Ghana.

Deep phylogeographical structure and parallel host range evolution in the leaf beetleAgelasa nigriceps

2013 ◽  
Vol 23 (2) ◽  
pp. 421-434 ◽  
Author(s):  
Tetsuo I. Kohyama ◽  
Kazuma Matsumoto ◽  
Haruo Katakura
Keyword(s):  
Host Range ◽  
Host Range Evolution

Research Advances in Potyviruses: From the Laboratory Bench to the Field

2021 ◽  
Vol 59 (1) ◽  
Author(s):  
Xiuling Yang ◽  
Yinzi Li ◽  
Aiming Wang
Keyword(s):  
Control Strategies ◽  
Genetic Resistance ◽  
Plant Viruses ◽  
Infection Process ◽  
Future Research ◽  
Annual Review ◽  
Publication Date ◽  
Viral Pathogens ◽  
Genome Expression ◽  
Amount Of Knowledge

Potyviruses (viruses in the genus Potyvirus, family Potyviridae) constitute the largest group of known plant-infecting RNA viruses and include many agriculturally important viruses that cause devastating epidemics and significant yield losses in many crops worldwide. Several potyviruses are recognized as the most economically important viral pathogens. Therefore, potyviruses are more studied than other groups of plant viruses. In the past decade, a large amount of knowledge has been generated to better understand potyviruses and their infection process. In this review, we list the top 10 economically important potyviruses and present a brief profile of each. We highlight recent exciting findings on the novel genome expression strategy and the biological functions of potyviral proteins and discuss recent advances in molecular plant–potyvirus interactions, particularly regarding the coevolutionary arms race. Finally, we summarize current disease control strategies, with a focus on biotechnology-based genetic resistance, and point out future research directions. Expected final online publication date for the Annual Review of Phytopathology, Volume 59 is August 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

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