scholarly journals Fluorescent Biaryl Uracils with C5-Dihydro- and Quinazolinone Heterocyclic Appendages in PNA

Molecules ◽  
2020 ◽  
Vol 25 (8) ◽  
pp. 1995 ◽  
Author(s):  
Ali Heidari ◽  
Arash Ghorbani-Choghamarani ◽  
Maryam Hajjami ◽  
Robert H. E. Hudson
Keyword(s):  
Nucleic Acids ◽  
Dna Sequences ◽  
Photophysical Properties ◽  
Molar Absorptivity ◽  
Transition Metal Catalysts ◽  
Quantum Yields ◽  
Molecular Rotor ◽  
Copper Salts ◽  
Complementary Dna ◽  
Modified Nucleobases

There has been much effort to exploit fluorescence techniques in the detection of nucleic acids. Canonical nucleic acids are essentially nonfluorescent; however, the modification of the nucleobase has proved to be a fruitful way to engender fluorescence. Much of the chemistry used to prepare modified nucleobases relies on expensive transition metal catalysts. In this work, we describe the synthesis of biaryl quinazolinone-uracil nucleobase analogs prepared by the condensation of anthranilamide derivatives and 5-formyluracil using inexpensive copper salts. A selection of modified nucleobases were prepared, and the effect of methoxy- or nitro- group substitution on the photophysical properties was examined. Both the dihydroquinazolinone and quinazolinone modified uracils have much larger molar absorptivity (~4–8×) than natural uracil and produce modest blue fluorescence. The quinazolinone-modified uracils display higher quantum yields than the corresponding dihydroquinazolinones and also show temperature and viscosity dependent emission consistent with molecular rotor behavior. Peptide nucleic acid (PNA) monomers possessing quinazolinone modified uracils were prepared and incorporated into oligomers. In the sequence context examined, the nitro-substituted, methoxy-substituted and unmodified quinazolinone inserts resulted in a stabilization (∆Tm = +4.0/insert; +2.0/insert; +1.0/insert, respectively) relative to control PNA sequence upon hybridization to complementary DNA. All three derivatives responded to hybridization by the “turn-on” of fluorescence intensity by ca. 3-to-4 fold and may find use as probes for complementary DNA sequences.

scholarly journals Terpyridine-Functionalized Calixarenes: Synthesis, Characterization and Anion Sensing Applications

Molecules ◽  
2020 ◽  
Vol 26 (1) ◽  
pp. 87
Author(s):  
Nicola Y. Edwards ◽  
David M. Schnable ◽  
Ioana R. Gearba-Dolocan ◽  
Jenna L. Strubhar
Keyword(s):  
Photophysical Properties ◽  
Binding Constants ◽  
Molar Absorptivity ◽  
Quantum Yields ◽  
Anion Sensing ◽  
Fluorescence Studies ◽  
Sensing Applications ◽  
Amide Coupling ◽  
Vis Spectroscopy ◽  
Arene Ligand

Lanthanide complexes have been developed and are reported herein. These complexes were derived from a terpyridine-functionalized calix[4]arene ligand, chelated with Tb3+ and Eu3+. Synthesis of these complexes was achieved in two steps from a calix[4]arene derivative: (1) amide coupling of a calix[4]arene bearing carboxylic acid functionalities and (2) metallation with a lanthanide triflate salt. The ligand and its complexes were characterized by NMR (1H and 13C), fluorescence and UV-vis spectroscopy as well as MS. The photophysical properties of these complexes were studied; high molar absorptivity values, modest quantum yields and luminescence lifetimes on the ms timescale were obtained. Anion binding results in a change in the photophysical properties of the complexes. The anion sensing ability of the Tb(III) complex was evaluated via visual detection, UV-vis and fluorescence studies. The sensor was found to be responsive towards a variety of anions, and large binding constants were obtained for the coordination of anions to the sensor.

scholarly journals Getting DNA and RNA out of the dark with 2CNqA: a bright adenine analogue and interbase FRET donor

2020 ◽  
Vol 48 (14) ◽  
pp. 7640-7652 ◽  
Author(s):  
Anna Wypijewska del Nogal ◽  
Anders F Füchtbauer ◽  
Mattias Bood ◽  
Jesper R Nilsson ◽  
Moa S Wranne ◽  
...  
Keyword(s):  
Quantum Yield ◽  
Nucleic Acids ◽  
Photophysical Properties ◽  
Resonance Energy Transfer ◽  
Resonance Energy ◽  
Molar Absorptivity ◽  
Dna And Rna ◽  
Double Stranded Dna ◽  
Rna Duplexes

Abstract With the central role of nucleic acids there is a need for development of fluorophores that facilitate the visualization of processes involving nucleic acids without perturbing their natural properties and behaviour. Here, we incorporate a new analogue of adenine, 2CNqA, into both DNA and RNA, and evaluate its nucleobase-mimicking and internal fluorophore capacities. We find that 2CNqA displays excellent photophysical properties in both nucleic acids, is highly specific for thymine/uracil, and maintains and slightly stabilises the canonical conformations of DNA and RNA duplexes. Moreover, the 2CNqA fluorophore has a quantum yield in single-stranded and duplex DNA ranging from 10% to 44% and 22% to 32%, respectively, and a slightly lower one (average 12%) inside duplex RNA. In combination with a comparatively strong molar absorptivity for this class of compounds, the resulting brightness of 2CNqA inside double-stranded DNA is the highest reported for a fluorescent base analogue. The high, relatively sequence-independent quantum yield in duplexes makes 2CNqA promising as a nucleic acid label and as an interbase Förster resonance energy transfer (FRET) donor. Finally, we report its excellent spectral overlap with the interbase FRET acceptors qAnitro and tCnitro, and demonstrate that these FRET pairs enable conformation studies of DNA and RNA.

Peptide nucleic acids containing adenine or guanine recognize thymine and cytosine in complementary DNA sequences

1993 ◽  
pp. 800 ◽  
Author(s):  
Michael Egholm ◽  
Carsten Behrens ◽  
Leif Christensen ◽  
Rolf H. Berg ◽  
Peter E. Nielsen ◽  
...  
Keyword(s):  
Nucleic Acids ◽  
Dna Sequences ◽  
Peptide Nucleic Acids ◽  
Complementary Dna

Regioselective Oxidative Cross-Coupling Reaction: Synthesis of Imidazo[1,2-a]pyridine Fluorophores

Synthesis ◽  
2021 ◽  
Author(s):  
Xianglong Chu ◽  
Yadi Niu ◽  
Chen Ma ◽  
Xiaodong Wang ◽  
Yunliang Lin ◽  
...  
Keyword(s):  
Photophysical Properties ◽  
Coupling Reaction ◽  
Cross Coupling ◽  
Quantum Yields ◽  
Fluorescence Quantum Yields ◽  
Cross Coupling Reaction ◽  
Color Tunable ◽  
Palladium Catalyzed ◽  
Structure Relationship ◽  
High Fluorescence

AbstractA rapid access to a series of N-heteroarene fluorophores has been developed on the basis of the palladium-catalyzed direct oxidative C–H/C–H coupling of imidazo[1,2-a]pyridines with thiophenes/furans. The photophysical properties–structure relationship was systematically investigated. The resulting N-heteroarene fluorophores present color-tunable emissions (λem: 431–507 nm in CH2Cl2) and high fluorescence quantum yields (up to 91% in CH2Cl2).

scholarly journals The Photostability of Novel Boron Hydride Blue Emitters in Solution and Polystyrene Matrix

Materials ◽  
2021 ◽  
Vol 14 (3) ◽  
pp. 589
Author(s):  
Jakub Ševčík ◽  
Pavel Urbánek ◽  
Barbora Hanulíková ◽  
Tereza Čapková ◽  
Michal Urbánek ◽  
...  
Keyword(s):  
Thin Films ◽  
Photophysical Properties ◽  
Inorganic Compounds ◽  
Solid Polymer ◽  
Organic Polymer ◽  
Quantum Yields ◽  
Boron Hydride ◽  
Polystyrene Matrix ◽  
Blue Emitters ◽  
Solvent Blends

In recent work, the boron hydride anti-B18H22 was announced in the literature as a new laser dye, and, along with several of its derivatives, its solutions are capable of delivering blue luminescence with quantum yields of unity. However, as a dopant in solid polymer films, its luminescent efficiencies reduce dramatically. Clarification of underlying detrimental effects is crucial for any application and, thus, this contribution makes the initial steps in the use of these inorganic compounds in electrooptical devices based on organic polymer thin films. The photoluminescence behavior of the highly luminescent boron hydrides, anti-B18H22 and 3,3′,4,4′-Et4-anti-B18H18, were therefore investigated. The quantum yields of luminescence and photostabilities of both compounds were studied in different solvents and as polymer-solvent blends. The photophysical properties of both boranes are evaluated and discussed in terms of their solvent-solute interactions using photoluminescence (PL) and NMR spectroscopies. The UV degradability of prepared thin films was studied by fluorimetric measurement. The effect of the surrounding atmosphere, dopant concentration and the molecular structure were assessed.

scholarly journals Photochemical Reactivity of Naphthol-Naphthalimide Conjugates and Their Biological Activity

Molecules ◽  
2021 ◽  
Vol 26 (11) ◽  
pp. 3355
Author(s):  
Matija Sambol ◽  
Patricia Benčić ◽  
Antonija Erben ◽  
Marija Matković ◽  
Branka Mihaljević ◽  
...  
Keyword(s):  
Biological Activity ◽  
Rational Design ◽  
Human Cancer ◽  
Photophysical Properties ◽  
Resonance Energy Transfer ◽  
Resonance Energy ◽  
Quinone Methide ◽  
Quantum Yields ◽  
Photochemical Reactivity ◽  
Human Cancer Cell Lines

Quinone methide precursors 1a–e, with different alkyl linkers between the naphthol and the naphthalimide chromophore, were synthesized. Their photophysical properties and photochemical reactivity were investigated and connected with biological activity. Upon excitation of the naphthol, Förster resonance energy transfer (FRET) to the naphthalimide takes place and the quantum yields of fluorescence are low (ΦF ≈ 10−2). Due to FRET, photodehydration of naphthols to QMs takes place inefficiently (ΦR ≈ 10−5). However, the formation of QMs can also be initiated upon excitation of naphthalimide, the lower energy chromophore, in a process that involves photoinduced electron transfer (PET) from the naphthol to the naphthalimide. Fluorescence titrations revealed that 1a and 1e form complexes with ct-DNA with moderate association constants Ka ≈ 105–106 M−1, as well as with bovine serum albumin (BSA) Ka ≈ 105 M−1 (1:1 complex). The irradiation of the complex 1e@BSA resulted in the alkylation of the protein, probably via QM. The antiproliferative activity of 1a–e against two human cancer cell lines (H460 and MCF 7) was investigated with the cells kept in the dark or irradiated at 350 nm, whereupon cytotoxicity increased, particularly for 1e (>100 times). Although the enhancement of this activity upon UV irradiation has no imminent therapeutic application, the results presented have importance in the rational design of new generations of anticancer phototherapeutics that absorb visible light.

Covalently-linked Adducts of Single-walled Nanotubes with Biomolecules: Synthesis, Hybridization, and Biologically-Directed Surface Assembly

2002 ◽  
Vol 761 ◽  
Author(s):  
Sarah E. Baker ◽  
Tami L. Lasseter ◽  
Lloyd M. Smith ◽  
Robert J. Hamers
Keyword(s):  
Carbon Nanotubes ◽  
Dna Sequences ◽  
Glass Surface ◽  
High Selectivity ◽  
Single Walled Carbon Nanotubes ◽  
Complementary Dna ◽  
Single Walled Carbon ◽  
Surface Assembly ◽  
Covalently Linked ◽  
Walled Carbon Nanotubes

ABSTRACTCovalently-linked adducts of single-walled carbon nanotubes (SWNTs) with biomolecules have been fabricated. Results are presented here for DNA-SWNT and for biotin-SWNT adducts. DNA-SWNT adducts are shown to be biochemically accessible and to exhibit high selectivity, favoring hybridization with complementary vs. non-complementary DNA sequences. Biotin-SWNT adducts were also prepared and used to direct the assembly of nanotubes onto a biotinylated glass surface.

scholarly journals Indenopyrans – synthesis and photoluminescence properties

2016 ◽  
Vol 12 ◽  
pp. 825-834 ◽  
Author(s):  
Andreea Petronela Diac ◽  
Ana-Maria Ţepeş ◽  
Albert Soran ◽  
Ion Grosu ◽  
Anamaria Terec ◽  
...  
Keyword(s):  
Solid State ◽  
Emission Band ◽  
Fluorescence Spectra ◽  
Photophysical Properties ◽  
Quantum Yields ◽  
Band Broadening ◽  
Photoluminescence Properties ◽  
Fluorescence Quantum Yields ◽  
Blue Emitters ◽  
Solid State Fluorescence

New indeno[1,2-c]pyran-3-ones bearing different substituents at the pyran moiety were synthesized and their photophysical properties were investigated. In solution all compounds were found to be blue emitters and the trans isomers exhibited significantly higher fluorescence quantum yields (relative to 9,10-diphenylanthracene) as compared to the corresponding cis isomers. The solid-state fluorescence spectra revealed an important red shift of λmax due to intermolecular interactions in the lattice, along with an emission-band broadening, as compared to the solution fluorescence spectra.

scholarly journals Triple-Helical DNA in Drosophila Heterochromatin

Cells ◽  
2018 ◽  
Vol 7 (12) ◽  
pp. 227 ◽  
Author(s):  
Eduardo Gorab
Keyword(s):  
Nucleic Acids ◽  
Dna Sequences ◽  
Detection Methods ◽  
Triplex Dna ◽  
Thiazole Orange ◽  
Chromosomal Dna ◽  
Mitotic Chromosomes ◽  
Satellite Repeats

Polynucleotide chains obeying Watson-Crick pairing are apt to form non-canonical complexes such as triple-helical nucleic acids. From early characterization in vitro, their occurrence in vivo has been strengthened by increasing evidence, although most remain circumstantial particularly for triplex DNA. Here, different approaches were employed to specify triple-stranded DNA sequences in the Drosophila melanogaster chromosomes. Antibodies to triplex nucleic acids, previously characterized, bind to centromeric regions of mitotic chromosomes and also to the polytene section 59E of mutant strains carrying the brown dominant allele, indicating that AAGAG tandem satellite repeats are triplex-forming sequences. The satellite probe hybridized to AAGAG-containing regions omitting chromosomal DNA denaturation, as expected, for the intra-molecular triplex DNA formation model in which single-stranded DNA coexists with triplexes. In addition, Thiazole Orange, previously described as capable of reproducing results obtained by antibodies to triple-helical DNA, binds to AAGAG repeats in situ thus validating both detection methods. Unusual phenotype and nuclear structure exhibited by Drosophila correlate with the non-canonical conformation of tandem satellite arrays. From the approaches that lead to the identification of triple-helical DNA in chromosomes, facilities particularly provided by Thiazole Orange use may broaden the investigation on the occurrence of triplex DNA in eukaryotic genomes.

scholarly journals Synthesis, Characterization and Photophysical Properties of a New 2,5-Di(aryl)phosphole Derivative and Their Trigonal Copper-Phosphole Complexes

2020 ◽  
Author(s):  
Neskarlys Rios ◽  
Franmerly Fuentes ◽  
Juan Manuel Garcia Garfido ◽  
Yomaira Otero
Keyword(s):  
Field Strength ◽  
Fluorescence Spectroscopy ◽  
Photophysical Properties ◽  
High Yield ◽  
Quantum Yields ◽  
Ligand Field ◽  
Emission Energy ◽  
Esi Ms

<div>A new phosphole derivative 2,5-di(2-quinolyl)-1-phenylphosphole (<b>1</b>) was synthesized by using the Fagan-Nugent method. Phosphole was obtained as an air stable solid in high yield (73%). Additionally, two new copper phosphole complexes [CuX(Phosphole)<sub>2</sub>] (X = Cl (<b>2a</b>), I (<b>2b</b>), Phosphole = <b>1</b>) have been synthesized by reaction of CuX (X = Cl, I) and phosphole derivative (<b>1</b>). All compound were characterized by NMR, ESI-MS, UV–Vis and fluorescence spectroscopy. The photophysical properties of all compounds were analyzed, UV-Vis spectra of the complexes <b>2a-b</b> shown π–π* transitions with shift very similar to the found in the free phosphole due to that their symmetrical structures inhibits efficient ILCT. We have found that the compounds <b>1</b>, <b>2a-b</b> exhibited fluorescence between 460 and 583 nm with quantum yields of Φ<sub>f</sub> = 0.04 – 0.11. The emission energy of <b>2b</b> is higher than <b>2a</b>, suggesting that λ<sub>max</sub> is affected by the ligand-field strength of the halogen ions in the complexes (I<sup>-</sup> < Cl<sup>-</sup> ).</div>

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