scholarly journals Cereal inflorescence: features of morphology, development and genetic regulation of morphogenesis

2018 ◽  
Vol 22 (7) ◽  
pp. 766-775
Author(s):  
O. B. Dobrovolskaya ◽  
A. E. Dresvyannikova
Keyword(s):  
Genetic Regulation ◽  
Growth And Yield ◽  
Ecological Communities ◽  
Inflorescence Development ◽  
Breeding Programs ◽  
Dicotyledonous Plants ◽  
Genetic Mechanisms ◽  
Morphology Development ◽  
Lateral Branches ◽  
Qualitative And Quantitative Characteristics

Cereals (Poaceae Barnh.) are the largest family of monocotyledonous flowering plants growing on all continents and constituting a significant part of Earth's many ecological communities. The Poaceae includes many important crops, such as rice, maize, wheat, barley, and rye. The qualitative and quantitative characteristics of cereal inflorescences are directly related to yield and are determined by the features of inflorescence development. This review considers modern concepts of the morphology, development and genetic mechanisms regulating the cereal inflorescence development. A common feature of cereal inflorescences is a spikelet, a reduced branch that bears florets with a similar structure and common scheme of development in all cereals. The length and the structure of the main axis, the presence and type of lateral branches cause a great variety of cereal inflorescences. Complex cereal inflorescences are formed from meristems of several types. The transition from the activity of one meristem to another is a multi-step process. The genes involved in the control of the cereal inflorescence development have been identified using mutants (mainly maize and rice) with altered inflorescence and floret morphology; most of these genes regulate the initiation and fate of meristems. The presence of some genetic mechanisms in cereals confirms the models previously discovered in dicotyledonous plants; on the other hand, there are cereal-specific developmental processes that are controlled by new modules of genetic regulation, in particular, associated with the formation of a branched inflorescence. An important aspect is the presence of quantitative variability of traits under the control of developmental genes, which is a prerequisite for the use of weak alleles contributing to the variability of plant growth and yield in breeding programs (for example, genes of the CLAVATA signaling pathway).

scholarly journals Adaptation assessment of drought tolerance in maize populations from the Sahara in both shores of the Mediterranean Sea

Euphytica ◽  
2021 ◽  
Vol 217 (8) ◽  
Author(s):  
Oula Maafi ◽  
Pedro Revilla ◽  
Lorena Álvarez-Iglesias ◽  
Rosa Ana Malvar ◽  
Abderahmane Djemel
Keyword(s):  
Drought Tolerance ◽  
Biomass Production ◽  
Genetic Regulation ◽  
Breeding Programs ◽  
Favorable Alleles ◽  
Maize Germplasm ◽  
Maize Populations ◽  
Potential Source ◽  
Main Stress ◽  
And Control

AbstractDrought is the main stress for agriculture, and maize (Zea mays L.) germplasm from the Sahara has been identified as potential source of drought tolerance; however, information about adaptation of semitropical maize germplasm from the Sahara to temperate areas has not been reported. Our objective was assessing the adaptation of maize germplasm from Saharan oases as sources of drought tolerance for improving yield and biomass production under drought conditions in temperate environments. A collection of maize populations from Saharan oases was evaluated under drought and control conditions in Spain and Algeria. Algerian populations were significantly different under drought for most traits, and the significant genotype × environment interactions indicated that drought tolerance is genotype-dependent, but tolerance differences among genotypes change across environments. Based on yield, the Algerian maize populations PI527474, PI527478, PI527472, PI527467, PI527470, and PI527473 would be appropriate sources of drought tolerance for temperate environments. Concerning biomass production, the most interesting populations were PI527467, PI542685, PI527478, and PI527472. These Saharan populations could provide favorable alleles for drought tolerance for temperate breeding programs, and could also be used for studying mechanisms and genetic regulation of drought tolerance.

scholarly journals Nuclear genetic regulation of the human mitochondrial transcriptome

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Aminah T Ali ◽  
Lena Boehme ◽  
Guillermo Carbajosa ◽  
Vlad C Seitan ◽  
Kerrin S Small ◽  
...  
Keyword(s):  
Gene Expression ◽  
Mitochondrial Genome ◽  
Complex Disease ◽  
Genetic Regulation ◽  
Cell Types ◽  
Tissue Cell ◽  
Cellular Processes ◽  
Genetic Mechanisms ◽  
Cell Type Specific ◽  
Nuclear Loci

Mitochondria play important roles in cellular processes and disease, yet little is known about how the transcriptional regime of the mitochondrial genome varies across individuals and tissues. By analyzing >11,000 RNA-sequencing libraries across 36 tissue/cell types, we find considerable variation in mitochondrial-encoded gene expression along the mitochondrial transcriptome, across tissues and between individuals, highlighting the importance of cell-type specific and post-transcriptional processes in shaping mitochondrial-encoded RNA levels. Using whole-genome genetic data we identify 64 nuclear loci associated with expression levels of 14 genes encoded in the mitochondrial genome, including missense variants within genes involved in mitochondrial function (TBRG4, MTPAP and LONP1), implicating genetic mechanisms that act in trans across the two genomes. We replicate ~21% of associations with independent tissue-matched datasets and find genetic variants linked to these nuclear loci that are associated with cardio-metabolic phenotypes and Vitiligo, supporting a potential role for variable mitochondrial-encoded gene expression in complex disease.

scholarly journals Genetics of Germination and Seedling Traits under Drought Stress in a MAGIC Population of Maize

Plants ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1786
Author(s):  
Soumeya Rida ◽  
Oula Maafi ◽  
Ana López-Malvar ◽  
Pedro Revilla ◽  
Meriem Riache ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Genome Wide Association Study ◽  
Genetic Regulation ◽  
Breeding Programs ◽  
Seedling Traits ◽  
Genome Wide ◽  
A Genome ◽  
Positive Correlations ◽  
Genomic Regions ◽  
Magic Population

Drought is one of the most detrimental abiotic stresses hampering seed germination, development, and productivity. Maize is more sensitive to drought than other cereals, especially at seedling stage. Our objective was to study genetic regulation of drought tolerance at germination and during seedling growth in maize. We evaluated 420 RIL with their parents from a multi-parent advanced generation inter-cross (MAGIC) population with PEG-induced drought at germination and seedling establishment. A genome-wide association study (GWAS) was carried out to identify genomic regions associated with drought tolerance. GWAS identified 28 and 16 SNPs significantly associated with germination and seedling traits under stress and well-watered conditions, respectively. Among the SNPs detected, two SNPs had significant associations with several traits with high positive correlations, suggesting a pleiotropic genetic control. Other SNPs were located in regions that harbored major QTLs in previous studies, and co-located with QTLs for cold tolerance previously published for this MAGIC population. The genomic regions comprised several candidate genes related to stresses and plant development. These included numerous drought-responsive genes and transcription factors implicated in germination, seedling traits, and drought tolerance. The current analyses provide information and tools for subsequent studies and breeding programs for improving drought tolerance.

scholarly journals Dissection of genetic regulation of compound inflorescence development inMedicago truncatula

Development ◽  
2018 ◽  
Vol 145 (3) ◽  
pp. dev158766 ◽  
Author(s):  
Xiaofei Cheng ◽  
Guifen Li ◽  
Yuhong Tang ◽  
Jiangqi Wen
Keyword(s):  
Genetic Regulation ◽  
Inflorescence Development

Understanding the Genetic Basis of C4 Kranz Anatomy with a View to Engineering C3 Crops

2018 ◽  
Vol 52 (1) ◽  
pp. 249-270 ◽  
Author(s):  
Olga V. Sedelnikova ◽  
Thomas E. Hughes ◽  
Jane A. Langdale
Keyword(s):  
Genetic Basis ◽  
Genetic Regulation ◽  
Crop Productivity ◽  
Research Field ◽  
Leaf Cell ◽  
Cell Type ◽  
Kranz Anatomy ◽  
Genetic Mechanisms ◽  
Metabolic Reactions ◽  
Type Specification

One of the most remarkable examples of convergent evolution is the transition from C3 to C4 photosynthesis, an event that occurred on over 60 independent occasions. The evolution of C4 is particularly noteworthy because of the complexity of the developmental and metabolic changes that took place. In most cases, compartmentalized metabolic reactions were facilitated by the development of a distinct leaf anatomy known as Kranz. C4 Kranz anatomy differs from ancestral C3 anatomy with respect to vein spacing patterns across the leaf, cell-type specification around veins, and cell-specific organelle function. Here we review our current understanding of how Kranz anatomy evolved and how it develops, with a focus on studies that are dissecting the underlying genetic mechanisms. This research field has gained prominence in recent years because understanding the genetic regulation of Kranz may enable the C3-to-C4 transition to be engineered, an endeavor that would significantly enhance crop productivity.

scholarly journals Morphogenesis, meristems and maize: Genetic regulation of inflorescence development in plants

2008 ◽  
Vol 319 (2) ◽  
pp. 610
Author(s):  
Paula McSteen ◽  
Andrea Skirpan ◽  
Solmaz Barazesh ◽  
Xianting Wu ◽  
Kim Phillips
Keyword(s):  
Genetic Regulation ◽  
Inflorescence Development ◽  
Maize Genetic

scholarly journals Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality

2014 ◽  
Author(s):  
Xia Shen ◽  
Jennifer De Jonge ◽  
Simon Forsberg ◽  
Mats Pettersson ◽  
Zheya Sheng ◽  
...  
Keyword(s):  
Genetic Regulation ◽  
Genome Wide Association ◽  
Genome Wide ◽  
Public Data ◽  
Wide Range ◽  
The World ◽  
Genetic Mechanisms ◽  
Novel Method ◽  
Major Allele ◽  
Temperature Seasonality

As Arabidopsis thaliana has colonized a wide range of habitats across the world it is an attractive model for studying the genetic mechanisms underlying environmental adaptation. Here, we used public data from two collections of A. thaliana accessions to associate genetic variability at individual loci with differences in climates at the sampling sites. We use a novel method to screen the genome for plastic alleles that tolerate a broader climate range than the major allele. This approach reduces confounding with population structure and increases power compared to standard genome-wide association methods. Sixteen novel loci were found, including an association between Chromomethylase 2 (CMT2) and temperature seasonality where the genome-wide CHH methylation was different for the group of accessions carrying the plastic allele. Cmt2 mutants were shown to be more tolerant to heat-stress, suggesting genetic regulation of epigenetic modifications as a likely mechanism underlying natural adaptation to variable temperatures, potentially through differential allelic plasticity to temperature-stress.

scholarly journals Stage Specificity, the Dynamic Regulators and the Unique Orchid Arundina graminifolia

2021 ◽  
Vol 22 (20) ◽  
pp. 10935
Author(s):  
Sagheer Ahmad ◽  
Chuqiao Lu ◽  
Yonglu Wei ◽  
Jie Gao ◽  
Jianpeng Jin ◽  
...  
Keyword(s):  
Flower Development ◽  
Genetic Regulation ◽  
Data Sets ◽  
Breeding Programs ◽  
Stage Specificity ◽  
Highly Expressed Genes ◽  
Arundina Graminifolia ◽  
Growth Development ◽  
Late Stages ◽  
Orchid Flower

Orchids take years to reach flowering, but the unique bamboo orchid (Arundina graminifolia) achieves reproductive maturity in six months and then keeps on year round flowering. Therefore, studying different aspects of its growth, development and flowering is key to boost breeding programs for orchids. This study uses transcriptome tools to discuss genetic regulation in five stages of flower development and four tissue types. Stage specificity was focused to distinguish genes specifically expressed in different stages of flower development and tissue types. The top 10 highly expressed genes suggested unique regulatory patterns for each stage or tissue. The A. graminifolia sequences were blasted in Arabidopsis genome to validate stage specific genes and to predict important hormonal and cell regulators. Moreover, weighted gene co-expression network analysis (WGCNA) modules were ascertained to suggest highly influential hubs for early and late stages of flower development, leaf and root. Hormonal regulators were abundant in all data sets, such as auxin (LAX2, GH3.1 and SAUR41), cytokinin (LOG1), gibberellin (GASA3 and YAB4), abscisic acid (DPBF3) and sucrose (SWEET4 and SWEET13). Findings of this study, thus, give a fine sketch of genetic variability in Orchidaceae and broaden our understanding of orchid flower development and the involvement of multiple pathways.

scholarly journals SISTER OF TM3 activates FRUITFULL1 to regulate inflorescence branching in tomato

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Xiaotian Wang ◽  
Zhiqiang Liu ◽  
Shuai Sun ◽  
Jianxin Wu ◽  
Ren Li ◽  
...  
Keyword(s):  
Regulatory Mechanism ◽  
Luciferase Reporter ◽  
Crop Breeding ◽  
Inflorescence Architecture ◽  
Inflorescence Development ◽  
Branching Structures ◽  
Qpcr Analysis ◽  
Genetic Mechanisms ◽  
Reporter Assays ◽  
Selection For

AbstractSelection for favorable inflorescence architecture to improve yield is one of the crucial targets in crop breeding. Different tomato varieties require distinct inflorescence-branching structures to enhance productivity. While a few important genes for tomato inflorescence-branching development have been identified, the regulatory mechanism underlying inflorescence branching is still unclear. Here, we confirmed that SISTER OF TM3 (STM3), a homolog of Arabidopsis SOC1, is a major positive regulatory factor of tomato inflorescence architecture by map-based cloning. High expression levels of STM3 underlie the highly inflorescence-branching phenotype in ST024. STM3 is expressed in both vegetative and reproductive meristematic tissues and in leaf primordia and leaves, indicative of its function in flowering time and inflorescence-branching development. Transcriptome analysis shows that several floral development-related genes are affected by STM3 mutation. Among them, FRUITFULL1 (FUL1) is downregulated in stm3cr mutants, and its promoter is bound by STM3 by ChIP-qPCR analysis. EMSA and dual-luciferase reporter assays further confirmed that STM3 could directly bind the promoter region to activate FUL1 expression. Mutation of FUL1 could partially restore inflorescence-branching phenotypes caused by high STM3 expression in ST024. Our findings provide insights into the molecular and genetic mechanisms underlying inflorescence development in tomato.

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