Early replication bands in two scorpion fishes, Scorpaena porcus and S. notata (order Scorpaneiformes)

1988 ◽  
Vol 47 (1-2) ◽  
pp. 80-83 ◽  
Author(s):  
V. Giles ◽  
G. Thode ◽  
M.C. Alvarez
Keyword(s):  
Early Replication ◽  
Replication Bands ◽  
Scorpaena Porcus

scholarly journals A model for detection of early replication bands in cultured fish

1991 ◽  
Vol 23 (Suppl 1) ◽  
pp. S157
Author(s):  
J Lobillo ◽  
JV Delgado ◽  
J Alonso ◽  
A Rodero
Keyword(s):  
Cultured Fish ◽  
Early Replication ◽  
Replication Bands

scholarly journals A CI-Independent Form of Replicative Inhibition: Turn Off of Early Replication of Bacteriophage Lambda

PLoS ONE ◽  
2012 ◽  
Vol 7 (5) ◽  
pp. e36498 ◽  
Author(s):  
Sidney Hayes ◽  
Monique A. Horbay ◽  
Connie Hayes
Keyword(s):  
Bacteriophage Lambda ◽  
Independent Form ◽  
Early Replication

scholarly journals At Short Telomeres Tel1 Directs Early Replication and Phosphorylates Rif1

PLoS Genetics ◽  
2014 ◽  
Vol 10 (10) ◽  
pp. e1004691 ◽  
Author(s):  
Akila Sridhar ◽  
Sylwia Kedziora ◽  
Anne D. Donaldson
Keyword(s):  
Early Replication

scholarly journals Previremic Identification of Ebola or Marburg Virus Infection Using Integrated Host-Transcriptome and Viral Genome Detection

mBio ◽  
2020 ◽  
Vol 11 (3) ◽  
Author(s):  
Emily Speranza ◽  
Ignacio Caballero ◽  
Anna N. Honko ◽  
Joshua C. Johnson ◽  
J. Kyle Bohannon ◽  
...  
Keyword(s):  
Host Response ◽  
Nonhuman Primates ◽  
Ebola Virus ◽  
Clinical Symptoms ◽  
Infectious Agent ◽  
Marburg Virus ◽  
Viral Rna ◽  
Molecular Tests ◽  
Early Replication ◽  
Host Infection

ABSTRACT Outbreaks of filoviruses, such as those caused by the Ebola (EBOV) and Marburg (MARV) virus, are difficult to detect and control. The initial clinical symptoms of these diseases are nonspecific and can mimic other endemic pathogens. This makes confident diagnosis based on clinical symptoms alone impossible. Molecular diagnostics for these diseases that rely on the detection of viral RNA in the blood are only effective after significant disease progression. As an approach to identify these infections earlier in the disease course, we tested the effectiveness of viral RNA detection combined with an assessment of sentinel host mRNAs that are upregulated following filovirus infection. RNAseq analysis of EBOV-infected nonhuman primates identified host RNAs that are upregulated at early stages of infection. NanoString probes that recognized these host-response RNAs were combined with probes that recognized viral RNA and were used to classify viral infection both prior to viremia and postviremia. This approach was highly successful at identifying samples from nonhuman primate subjects and correctly distinguished the causative agent in a previremic stage in 10 EBOV and 5 MARV samples. This work suggests that unified host response/viral fingerprint assays can enable diagnosis of disease earlier than testing for viral nucleic acid alone, which could decrease transmission events and increase therapeutic effectiveness. IMPORTANCE Current molecular tests that identify infection with high-consequence viruses such as Ebola virus and Marburg virus are based on the detection of virus material in the blood. These viruses do not undergo significant early replication in the blood and, instead, replicate in organs such as the liver and spleen. Thus, virus begins to accumulate in the blood only after significant replication has already occurred in those organs, making viremia an indicator of infection only after initial stages have become established. Here, we show that a multianalyte assay can correctly identify the infectious agent in nonhuman primates (NHPs) prior to viremia through tracking host infection response transcripts. This illustrates that a single-tube, sample-to-answer format assay could be used to advance the time at which the type of infection can be determined and thereby improve outcomes.

scholarly journals The Spatial Heterogeneity of the Black Scorpionfish, Scorpaena porcus (Scorpaenidae): Differences in Length, Dietary and Age Compositions

2021 ◽  
Vol 11 (24) ◽  
pp. 11919
Author(s):  
Josipa Ferri ◽  
Sanja Matić-Skoko
Keyword(s):  
High Selectivity ◽  
Adriatic Sea ◽  
Multivariate Analyses ◽  
Growth Parameters ◽  
Island Area ◽  
Intraspecific Variations ◽  
Geographical Scale ◽  
Diet Analyses ◽  
Slow Growing ◽  
Scorpaena Porcus

The present study assessed spatial variations in several biological characteristics of Scorpaena porcus Linnaeus, 1758 and estimated length structure, dietary composition and growth parameters for the species. Sampling was carried out in two areas, about 200 km apart, in the coastal Adriatic Sea, which is the northernmost region of the Mediterranean. A total of 388 specimens of S. porcus were caught, 233 from the Split area and 155 from the Pag Island area, and a higher proportion of individuals in the ≤15 cm length classes were found in the Split area. The results of the age, growth and diet analyses demonstrated that the black scorpionfish is a slow-growing and long-lived species that feeds on a wide variety of plant and animal taxa and shows a high selectivity for crustacean decapods. Detailed comparisons and multivariate analyses showed significant fine-scale spatial structuring of the investigated species, as observed length, dietary and age compositions were heterogeneous among the two areas. Fish from the Pag Island area ingested a greater diversity of the prey types, fed to a greater extent on fishes, reached the highest total length and showed a higher growth rate. Such intraspecific variations could reflect adaptations to different environmental conditions and support the geographical scale at which local black scorpionfish populations should be managed.

scholarly journals Reovirus core proteins λ1 and σ2 promote stability of disassembly intermediates and influence early replication events

2020 ◽  
Author(s):  
Stephanie Gummersheimer ◽  
Pranav Danthi
Keyword(s):  
Conformational Changes ◽  
Genetic Material ◽  
Point Mutations ◽  
Host Cells ◽  
Capsid Proteins ◽  
Endosomal Membrane ◽  
The Core ◽  
Core Proteins ◽  
Early Replication ◽  
Outer Capsid

ABSTRACTThe capsids of mammalian reovirus contain two concentric protein shells, the core and the outer capsid. The outer capsid is comprised of µ1-σ3 heterohexamers which surround the core. The core is comprised of λ1 decamers held in place by σ2. After entry into the endosome, σ3 is proteolytically degraded and µ1 is cleaved and exposed to form ISVPs. ISVPs undergo further conformational changes to form ISVP*s, resulting in the release of µ1 peptides which facilitate the penetration of the endosomal membrane to release transcriptionally active core particles into the cytoplasm. Previous work has identified regions or specific residues within reovirus outer capsid that impact the efficiency of cell entry. We examined the functions of the core proteins λ1 and σ2. We generated a reovirus T3D reassortant that carries strain T1L derived σ2 and λ1 proteins (T3D/T1L L3S2). This virus displays a lower ISVP stability and therefore converts to ISVP*s more readily. To identify the basis for lability of T3D/T1L L3S2, we screened for hyper-stable mutants of T3D/T1L L3S2 and identified three point mutations in µ1 that stabilize ISVPs. Two of these mutations are located in the C-terminal ϕ region of µ1, which has not previously been implicated in controlling ISVP stability. Independent from compromised ISVP stability, we also found that T3D/T1L L3S2 launches replication more efficiently and produces higher yields in infected cells. In addition to identifying a new role for the core proteins in disassembly events, these data highlight that core proteins may influence multiple stages of infection.IMPORTANCEProtein shells of viruses (capsids) have evolved to undergo specific changes to ensure the timely delivery of genetic material to host cells. The 2-layer capsid of reovirus provides a model system to study the interactions between capsid proteins and the changes they undergo during entry. We tested a virus in which the core proteins were derived from a different strain than the outer capsid. We found that this mismatched virus was less stable and completed conformational changes required for entry prematurely. Capsid stability was restored by introduction of specific changes to the outer capsid, indicating that an optimal fit between inner and outer shells maintains capsid function. Separate from this property, mismatch between these protein layers also impacted the capacity of virus to initiate infection and produce progeny. This study reveals new insights into the roles of capsid proteins and their multiple functions during viral replication.

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