scholarly journals Peptidergic control of food intake and digestion in insects 1This review is part of a virtual symposium on recent advances in understanding a variety of complex regulatory processes in insect physiology and endocrinology, including development, metabolism, cold hardiness, food intake and digestion, and diuresis, through the use of omics technologies in the postgenomic era.

2012 ◽  
Vol 90 (4) ◽  
pp. 489-506 ◽  
Author(s):  
J. Spit ◽  
L. Badisco ◽  
H. Verlinden ◽  
P. Van Wielendaele ◽  
S. Zels ◽  
...  
Keyword(s):  
Food Intake ◽  
Cold Hardiness ◽  
Endocrine Cells ◽  
Large Scale ◽  
Regulatory Peptides ◽  
Regulatory Processes ◽  
Peptide Precursor ◽  
Multiple Levels ◽  
Physiological Tasks ◽  
Saliva Production

Like all heterotrophic organisms, insects require a strict control of food intake and efficient digestion of food into nutrients to maintain homeostasis and to fulfill physiological tasks. Feeding and digestion are steered by both external and internal signals that are transduced by a multitude of regulatory factors, delivered either by neurons innervating the gut or mouthparts, or by midgut endocrine cells. The present review gives an overview of peptide regulators known to control feeding and digestion in insects. We describe the discovery and functional role in these processes for insect allatoregulatory peptides, diuretic hormones, FMRFamide-related peptides, (short) neuropeptide F, proctolin, saliva production stimulating peptides, kinins, and tachykinins. These peptides control either gut myoactivity, food intake, and (or) release of digestive enzymes. Some peptides exert their action at multiple levels, possibly having a biological function that depends on their site of delivery. Many regulatory peptides have been physically extracted from different insect species. However, multiple peptidomics, proteomics, transcriptomics, and genome sequencing projects have led to increased discovery and prediction of peptide (precursor) and receptor sequences. In combination with physiological experiments, these large-scale projects have already led to important steps forward in unraveling the physiology of feeding and digestion in insects.

Advances in insect physiology and endocrinology through genomics, peptidomics, and related technologies1Introduction to the virtual symposium on recent advances in understanding a variety of complex regulatory processes in insect physiology and endocrinology, including development, metabolism, cold hardiness, food intake and digestion, and diuresis, through the use of omics technologies in the postgenomic era.

2012 ◽  
Vol 90 (4) ◽  
pp. 435-439 ◽  
Author(s):  
I. Orchard ◽  
A.B. Lange
Keyword(s):  
Food Intake ◽  
Canadian Journal ◽  
Cold Hardiness ◽  
Endocrine Control ◽  
Insect Physiology ◽  
Omics Technologies ◽  
Regulatory Processes ◽  
Insect Biology ◽  
Rich History ◽  
Genome Projects

This series of the Canadian Journal of Zoology brings together scientists actively working on insect physiology and endocrinology in this postgenomic era. This issue is timely and appropriate. Timely, because of the pace of change brought about by genome projects, functional genomics and genetics (omics technologies), including gene microarrays, mutations, RNAi, and sophisticated mass spectrometry techniques, which are helping to unravel complex regulatory processes. Appropriate, because Canada, and the Canadian Journal of Zoology, has a rich history and strong tradition of cutting-edge research in insect biology—with particular strengths in insect physiology and endocrinology. The first review illustrates how these very modern omics technologies can be embraced and applied to insect physiology and endocrinology, and the subsequent reviews illustrate this in practice, with regard to insect cold hardiness, insulin signaling and stress, peptidergic control of food intake and digestion, endocrine control of diuresis, and finally allatoregulatory peptides. These reviews set the scene and context for the exciting era that we find ourselves in, and the depth of understanding that has come from this postgenomic revolution.

scholarly journals Diffusion MRI data, sulcal anatomy, and tractography for eight species from the Primate Brain Bank

2021 ◽  
Author(s):  
Katherine L. Bryant ◽  
Dirk Jan Ardesch ◽  
Lea Roumazeilles ◽  
Lianne H. Scholtens ◽  
Alexandre A. Khrapitchev ◽  
...  
Keyword(s):  
Diffusion Mri ◽  
Large Scale ◽  
Structural Mri ◽  
Relative Volume ◽  
Primate Species ◽  
Brain Bank ◽  
Cingulum Bundle ◽  
Primate Brain ◽  
Multiple Levels ◽  
Comparative Neuroscience

AbstractLarge-scale comparative neuroscience requires data from many species and, ideally, at multiple levels of description. Here, we contribute to this endeavor by presenting diffusion and structural MRI data from eight primate species that have not or rarely been described in the literature. The selected samples from the Primate Brain Bank cover a prosimian, New and Old World monkeys, and a great ape. We present preliminary labelling of the cortical sulci and tractography of the optic radiation, dorsal part of the cingulum bundle, and dorsal parietal–frontal and ventral temporal-frontal longitudinal white matter tracts. Both dorsal and ventral association fiber systems could be observed in all samples, with the dorsal tracts occupying much less relative volume in the prosimian than in other species. We discuss the results in the context of known primate specializations and present hypotheses for further research. All data and results presented here are available online as a resource for the scientific community.

scholarly journals Large scale land investments and food security in agropastoral areas of Ethiopia

Food Security ◽  
2021 ◽  
Author(s):  
Adugna Eneyew Bekele ◽  
Liesbeth Dries ◽  
Wim Heijman ◽  
Dusan Drabik
Keyword(s):  
Food Security ◽  
Food Intake ◽  
Large Scale ◽  
Living Standard ◽  
Additional Food ◽  
The World Bank ◽  
Direct Benefits ◽  
Large Scale Land ◽  
Household Food Consumption ◽  
Positive Effect

AbstractIn Ethiopia, large scale land investments have been expanding into pastoral regions. However, little is known about the consequences of these investments on the food security of the pastoral community. Using Living Standard Measurement Survey data of the World Bank, we find that, on average, about 32% of the respondents from the (agro-)pastoral regions are food insecure. After controlling for confounders, proximity to large scale land investments is associated with additional food intake of up to 745 kcal per day per adult compared to the households located farther away from a large scale land investment. Proximity to large scale land investment has no significant effect on the coping strategies based food security. For households located in proximity to a large scale land investment, food intake significantly increases with access to roads and markets. Proximity to a large scale land investment has a positive effect on household food consumption not necessarily because of direct benefits from large scale land investments, but due to land and soil quality near the large scale land investments.

scholarly journals Innovative approaches to estimate individual usual dietary intake in large-scale epidemiological studies

2017 ◽  
Vol 76 (3) ◽  
pp. 213-219 ◽  
Author(s):  
Johanna Conrad ◽  
Ute Nöthlings
Keyword(s):  
Food Intake ◽  
Dietary Intake ◽  
Statistical Methods ◽  
Large Scale ◽  
New Technologies ◽  
Epidemiological Studies ◽  
Web Based ◽  
Food Records ◽  
Usual Intake ◽  
Innovative Approaches

Valid estimation of usual dietary intake in epidemiological studies is a topic of present interest. The aim of the present paper is to review recent literature on innovative approaches focussing on: (1) the requirements to assess usual intake and (2) the application in large-scale settings. Recently, a number of technology-based self-administered tools have been developed, including short-term instruments such as web-based 24-h recalls, mobile food records or simple closed-ended questionnaires that assess the food intake of the previous 24 h. Due to their advantages in terms of feasibility and cost-effectiveness these tools may be superior to conventional assessment methods in large-scale settings. New statistical methods have been developed to combine dietary information from repeated 24-h dietary recalls and FFQ. Conceptually, these statistical methods presume that the usual food intake of a subject equals the probability of consuming a food on a given day, multiplied by the average amount of intake of that food on a typical consumption day. Repeated 24-h recalls from the same individual provide information on consumption probability and amount. In addition, the FFQ can add information on intake frequency of rarely consumed foods. It has been suggested that this combined approach may provide high-quality dietary information. A promising direction for estimation of usual intake in large-scale settings is the integration of both statistical methods and new technologies. Studies are warranted to assess the validity of estimated usual intake in comparison with biomarkers.

scholarly journals A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Nelly F Mostajo ◽  
Marie Lataretu ◽  
Sebastian Krautwurst ◽  
Florian Mock ◽  
Daniel Desirò ◽  
...  
Keyword(s):  
Gene Expression ◽  
Expression Analysis ◽  
Large Scale ◽  
Viral Infections ◽  
Gene Expression Regulation ◽  
Expression Patterns ◽  
Differential Expression Analysis ◽  
Regulatory Processes ◽  
Genome Annotations ◽  
Host Virus Interactions

Abstract Although bats are increasingly becoming the focus of scientific studies due to their unique properties, these exceptional animals are still among the least studied mammals. Assembly quality and completeness of bat genomes vary a lot and especially non-coding RNA (ncRNA) annotations are incomplete or simply missing. Accordingly, standard bioinformatics pipelines for gene expression analysis often ignore ncRNAs such as microRNAs or long antisense RNAs. The main cause of this problem is the use of incomplete genome annotations. We present a complete screening for ncRNAs within 16 bat genomes. NcRNAs affect a remarkable variety of vital biological functions, including gene expression regulation, RNA processing, RNA interference and, as recently described, regulatory processes in viral infections. Within all investigated bat assemblies, we annotated 667 ncRNA families including 162 snoRNAs and 193 miRNAs as well as rRNAs, tRNAs, several snRNAs and lncRNAs, and other structural ncRNA elements. We validated our ncRNA candidates by six RNA-Seq data sets and show significant expression patterns that have never been described before in a bat species on such a large scale. Our annotations will be usable as a resource (rna.uni-jena.de/supplements/bats) for deeper studying of bat evolution, ncRNAs repertoire, gene expression and regulation, ecology and important host–virus interactions.

Composition and function of macroencapsulated human embryonic stem cell-derived implants: comparison with clinical human islet cell grafts

2014 ◽  
Vol 307 (9) ◽  
pp. E838-E846 ◽  
Author(s):  
Evi Motté ◽  
Edit Szepessy ◽  
Krista Suenens ◽  
Geert Stangé ◽  
Myriam Bomans ◽  
...  
Keyword(s):  
Islet Cell ◽  
Endocrine Cells ◽  
Large Scale ◽  
Therapeutic Potential ◽  
Ex Vivo ◽  
Embryonic Stem ◽  
Human Islet ◽  
Insulin Biosynthesis ◽  
Β Cells ◽  
C Peptide

β-Cells generated from large-scale sources can overcome current shortages in clinical islet cell grafts provided that they adequately respond to metabolic variations. Pancreatic (non)endocrine cells can develop from human embryonic stem (huES) cells following in vitro derivation to pancreatic endoderm (PE) that is subsequently implanted in immune-incompetent mice for further differentiation. Encapsulation of PE increases the proportion of endocrine cells in subcutaneous implants, with enrichment in β-cells when they are placed in TheraCyte-macrodevices and predominantly α-cells when they are alginate-microencapsulated. At posttransplant (PT) weeks 20–30, macroencapsulated huES implants presented higher glucose-responsive plasma C-peptide levels and a lower proinsulin-over-C-peptide ratio than human islet cell implants under the kidney capsule. Their ex vivo analysis showed the presence of single-hormone-positive α- and β-cells that exhibited rapid secretory responses to increasing and decreasing glucose concentrations, similar to isolated human islet cells. However, their insulin secretory amplitude was lower, which was attributed in part to a lower cellular hormone content; it was associated with a lower glucose-induced insulin biosynthesis, but not with lower glucagon-induced stimulation, which together is compatible with an immature functional state of the huES-derived β-cells at PT weeks 20–30. These data support the therapeutic potential of macroencapsulated huES implants but indicate the need for further functional analysis. Their comparison with clinical-grade human islet cell grafts sets references for future development and clinical translation.

Insect omics research coming of age1This review is part of a virtual symposium on recent advances in understanding a variety of complex regulatory processes in insect physiology and endocrinology, including development, metabolism, cold hardiness, food intake and digestion, and diuresis, through the use of omics technologies in the postgenomic era.

2012 ◽  
Vol 90 (4) ◽  
pp. 440-455 ◽  
Author(s):  
Bart Boerjan ◽  
Dries Cardoen ◽  
Rik Verdonck ◽  
Jelle Caers ◽  
Liliane Schoofs
Keyword(s):  
Rna Interference ◽  
Cold Hardiness ◽  
Model Organisms ◽  
Sequence Information ◽  
Huge Amount ◽  
Omics Technologies ◽  
Regulatory Processes ◽  
Biological Aspects ◽  
Insect Biology ◽  
Functional Inactivation

As more and more insect genomes are fully sequenced and annotated, omics technologies, including transcriptomic, proteomic, peptidomics, and metobolomic profiling, as well as bioinformatics, can be used to exploit this huge amount of sequence information for the study of different biological aspects of insect model organisms. Omics experiments are an elegant way to deliver candidate genes, the function of which can be further explored by genetic tools for functional inactivation or overexpression of the genes of interest. Such tools include mainly RNA interference and are currently being developed in diverse insect species. In this manuscript, we have reviewed how omics technologies were integrated and applied in insect biology.

scholarly journals Genome-Wide Identification and Characterization of Long Non-Coding RNAs in Peanut

Genes ◽  
2019 ◽  
Vol 10 (7) ◽  
pp. 536 ◽  
Author(s):  
Xiaobo Zhao ◽  
Liming Gan ◽  
Caixia Yan ◽  
Chunjuan Li ◽  
Quanxi Sun ◽  
...  
Keyword(s):  
Large Scale ◽  
Target Genes ◽  
Sequencing Data ◽  
Regulatory Processes ◽  
Genome Wide ◽  
Non Coding Rnas ◽  
Identification And Characterization ◽  
Lower Expression ◽  
Weighted Correlation

Long non-coding RNAs (lncRNAs) are involved in various regulatory processes although they do not encode protein. Presently, there is little information regarding the identification of lncRNAs in peanut (Arachis hypogaea Linn.). In this study, 50,873 lncRNAs of peanut were identified from large-scale published RNA sequencing data that belonged to 124 samples involving 15 different tissues. The average lengths of lncRNA and mRNA were 4335 bp and 954 bp, respectively. Compared to the mRNAs, the lncRNAs were shorter, with fewer exons and lower expression levels. The 4713 co-expression lncRNAs (expressed in all samples) were used to construct co-expression networks by using the weighted correlation network analysis (WGCNA). LncRNAs correlating with the growth and development of different peanut tissues were obtained, and target genes for 386 hub lncRNAs of all lncRNAs co-expressions were predicted. Taken together, these findings can provide a comprehensive identification of lncRNAs in peanut.

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