Differential occurrence of chromosome inversion polymorphisms among Muller's elements in three species of the tripunctata group of Drosophila, including a species with fast chromosomal evolution

Genome ◽  
2013 ◽  
Vol 56 (1) ◽  
pp. 17-26 ◽  
Author(s):  
Mitsue T. Brianti ◽  
Galina Ananina ◽  
Louis B. Klaczko
Keyword(s):  
Pericentric Inversion ◽  
Chromosome Pair ◽  
Genetic Architecture ◽  
Polytene Chromosomes ◽  
Chromosomal Evolution ◽  
Chromosome Inversion ◽  
Closely Related Species ◽  
Chromosome Inversions ◽  
Chromosome Maps ◽  
Chromosome Fusions

Detailed chromosome maps with reliable homologies among chromosomes of different species are the first step to study the evolution of the genetic architecture in any set of species. Here, we present detailed photo maps of the polytene chromosomes of three closely related species of the tripunctata group (subgenus Drosophila): Drosophila mediopunctata, D. roehrae, and D. unipunctata. We identified Muller's elements in each species, using FISH, establishing reliable chromosome homologies among species and D. melanogaster. The simultaneous analysis of chromosome inversions revealed a distribution pattern for the inversion polymorphisms among Muller's elements in the three species. Element E is the most polymorphic, with many inversions in each species. Element C follows; while the least polymorphic elements are B and D. While interesting, it remains to be determined how general this pattern is among species of the tripunctata group. Despite previous studies showing that D. mediopunctata and D. unipunctata are phylogenetically closer to each other than to D. roehrae, D. unipunctata shows rare karyotypic changes. It has two chromosome fusions: an additional heterochromatic chromosome pair and a pericentric inversion in the X chromosome. This especial conformation suggests a fast chromosomal evolution that deserves further study.

scholarly journals Range Overlap Drives Chromosome Inversion Fixation in Passerine Birds

2016 ◽  
Author(s):  
Daniel M. Hooper
Keyword(s):  
Pericentric Inversion ◽  
Sex Chromosome ◽  
Gc Content ◽  
Divergence Times ◽  
Passerine Birds ◽  
Genomic Context ◽  
Chromosome Inversion ◽  
Closely Related Species ◽  
Chromosome Inversions ◽  
Range Overlap

Chromosome inversions evolve frequently but the reasons why remain largely enigmatic. I used cytological descriptions of 410 species of passerine birds (order Passeriformes) to identify pericentric inversion differences between species. Using a new fossil-calibrated phylogeny I examine the phylogenetic, demographic, and genomic context in which these inversions have evolved. The number of inversion differences between closely related species was highly variable yet consistently predicted by a single factor: whether the ranges of species overlapped. This observation holds even when the analysis is restricted to sympatric sister pairs known to hybridize, and which have divergence times estimated similar to allopatric pairs. Inversions were significantly more likely to have fixed on a sex chromosome than an autosome yet variable mutagenic input alone (by chromosome size, map length, GC content, or repeat density) cannot explain the differences between chromosomes in the number of inversions fixed. Together, these results support a model in which inversions in passerines are adaptive and spread by selection when gene flow occurs before reproductive isolation is complete.

A cytogenetic analysis of the chromosomes in two related species of the genus Muscari (Liliaceae)

Genome ◽  
1990 ◽  
Vol 33 (5) ◽  
pp. 729-732 ◽  
Author(s):  
C. Ruiz Rejón ◽  
R. Lozano ◽  
M. Ruiz Rejón
Keyword(s):  
Related Species ◽  
Cytogenetic Analysis ◽  
Chromosome Pair ◽  
Chromosomal Evolution ◽  
Closely Related Species ◽  
Positive Band ◽  
Nucleolus Organizing Region ◽  
Cytogenetic Analyses

Muscari comosum L. and Muscari matritensis Ruiz Rejón et al. are two closely related species of the subgenus Leopoldia, belonging to the genus Muscari (Liliaceae). Cytogenetic analyses have been made to analyse the differences between these species. Major differences are that M. comosum has four or five dark intercalary 4,6-diamidino-2-phenylindole (DAPI) positive C-bands in the first chromosome pair, whereas M. matritensis has only three thin bands. Muscari comosum has a large chromomycin A3 positive C-band in the fifth, nucleolus organizing region (NOR) bearing chromosome pair, whereas M. matritensis has the CMA3-positive band and the NOR in the short arm of the second pair. The possible role played by occurrences of translocations and amplifications in the chromosomal evolution of these species is discussed.Key words: Muscari, Liliaceae, karyotypes, evolution.

Salivary polytene chromosome mapping of Anopheles (Cellia) subpictus Grassi (Culicidae: Diptera)

Genome ◽  
2005 ◽  
Vol 48 (2) ◽  
pp. 241-246 ◽  
Author(s):  
S Chaudhry ◽  
Neetu ◽  
S Gupta ◽  
J S Chhilar
Keyword(s):  
Polytene Chromosome ◽  
X Chromosome ◽  
Dna Sequences ◽  
Molecular Taxonomy ◽  
Polytene Chromosomes ◽  
Chromosome Mapping ◽  
Anopheles Subpictus ◽  
Chromosome Inversion ◽  
Chromosome Maps ◽  
The Comparative Study

With the introduction of molecular taxonomy of mosquitoes, polytene chromosome maps have become indispensable as standard references for locating genes, puffs, and inversion breakpoints of unique DNA sequences. We present a line map and a photomap of the salivary polytene chromosomes of Anopheles (Cellia) subpictus Grassi, an important emerging vector of malaria in India. In addition, we discuss the nature of this species complex consisting of sibling species A, B, C, and D. The comparative study is in relevance to the X chromosome heterozygous inversion differences between 2 allopatric populations of the species and the recognition of 4 X-chromosome inversion genotypes viz: species A–X+a+b, B–Xab, C–Xa+b and D–X+ab.Key words: Anopheles subpictus, polytene chromosome map.

scholarly journals Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon

2020 ◽  
Vol 10 (5) ◽  
pp. 1553-1561 ◽  
Author(s):  
Garrett McKinney ◽  
Megan V. McPhee ◽  
Carita Pascal ◽  
James E. Seeb ◽  
Lisa W. Seeb
Keyword(s):  
Population Structure ◽  
Linkage Disequilibrium ◽  
Network Analysis ◽  
Chum Salmon ◽  
Sex Chromosome ◽  
Natural Populations ◽  
Population Substructure ◽  
Chromosome Inversion ◽  
Genomic Features ◽  
Chromosome Inversions

Many studies exclude loci that exhibit linkage disequilibrium (LD); however, high LD can signal reduced recombination around genomic features such as chromosome inversions or sex-determining regions. Chromosome inversions and sex-determining regions are often involved in adaptation, allowing for the inheritance of co-adapted gene complexes and for the resolution of sexually antagonistic selection through sex-specific partitioning of genetic variants. Genomic features such as these can escape detection when loci with LD are removed; in addition, failing to account for these features can introduce bias to analyses. We examined patterns of LD using network analysis to identify an overlapping chromosome inversion and sex-determining region in chum salmon. The signal of the inversion was strong enough to show up as false population substructure when the entire dataset was analyzed, while the effect of the sex-determining region on population structure was only obvious after restricting analysis to the sex chromosome. Understanding the extent and geographic distribution of inversions is now a critically important part of genetic analyses of natural populations. Our results highlight the importance of analyzing and understanding patterns of LD in genomic dataset and the perils of excluding or ignoring loci exhibiting LD. Blindly excluding loci in LD would have prevented detection of the sex-determining region and chromosome inversion while failing to understand the genomic features leading to high-LD could have resulted in false interpretations of population structure.

Photographic polytene chromosome maps for Glossina morsitans submorsitans (Diptera: Glossinidae): cytogenetic analysis of a colony with sex-ratio distortion

Genome ◽  
2002 ◽  
Vol 45 (5) ◽  
pp. 871-880 ◽  
Author(s):  
A Gariou-Papalexiou ◽  
G Yannopoulos ◽  
A Zacharopoulou ◽  
R H Gooding
Keyword(s):  
Sex Ratio ◽  
Polytene Chromosome ◽  
X Chromosome ◽  
Polytene Chromosomes ◽  
Glossina Morsitans ◽  
Glossina Morsitans Submorsitans ◽  
Ratio Distortion ◽  
Chromosome Maps ◽  
Sex Ratio Distortion ◽  
Pharate Adult

Photographic polytene chromosome maps from trichogen cells of pharate adult Glossina morsitans submorsitans were constructed. Using the standard system employed to map polytene chromosomes of Drosophila, the characteristic landmarks were described for the X chromosome and the two autosomes (L1 and L2). Sex-ratio distortion, which is expressed in male G. m. submorsitans, was found to be associated with an X chromosome (XB) that contains three inversions in each arm. Preliminary data indicate no differences in the fecundity of XAXA and XAXB females, but there are indications that G. m. submorsitans in colonies originating from Burkina Faso and Nigeria have genes on the autosomes and (or) the Y chromosome that suppress expression of sex-ratio distortion.Key words: tsetse, Glossina morsitans submorsitans, polytene chromosome maps, inversions, sex-ratio distortion.

scholarly journals Chromosomal Evolution in the Lizard Genus Varanus (Reptilia)

1975 ◽  
Vol 28 (1) ◽  
pp. 89 ◽  
Author(s):  
Max Kinga ◽  
Dennis King
Keyword(s):  
Chromosome Number ◽  
Pericentric Inversion ◽  
Sex Chromosome ◽  
Chromosomal Rearrangements ◽  
Chromosomal Evolution ◽  
Size Groups ◽  
Sex Chromosome System

The karyotypes have been determined of 16 of the 32 species of the genus Varanus, including animals from Africa, Israel, Malaya and Australia. A constant chromosome number of 2n = 40 was observed. The karyotype is divided into eight pairs of large chromosomes and 12 pairs of microchromosomes. A series of chromosomal rearrangements have become established in both size groups of the karyotype and are restricted to centromere shifts, probably caused by pericentric inversion. Species could be placed in one of six distinct karyotype groups which are differentiated by these rearrangements and whose grouping does not always correspond with the current taxonomy. An unusual sex chromosome system of the ZZjZW type was present in a number of the species examined.

scholarly journals Chromosome and Genome Divergence between the Cryptic Eurasian Malaria Vector-Species Anopheles messeae and Anopheles daciae

Genes ◽  
2020 ◽  
Vol 11 (2) ◽  
pp. 165 ◽  
Author(s):  
Anastasia N. Naumenko ◽  
Dmitriy A. Karagodin ◽  
Andrey A. Yurchenko ◽  
Anton V. Moskaev ◽  
Olga I. Martin ◽  
...  
Keyword(s):  
X Chromosome ◽  
Malaria Vector ◽  
Its2 Region ◽  
Nucleotide Substitutions ◽  
Closely Related Species ◽  
Chromosomal Inversions ◽  
Chromosome Inversions ◽  
Genome Wide ◽  
Genome Divergence ◽  
Incomplete Reproductive Isolation

Chromosomal inversions are important drivers of genome evolution. The Eurasian malaria vector Anopheles messeae has five polymorphic inversions. A cryptic species, An. daciae, has been discriminated from An. messeae based on five fixed nucleotide substitutions in the internal transcribed spacer 2 (ITS2) of ribosomal DNA. However, the inversion polymorphism in An. daciae and the genome divergence between these species remain unexplored. In this study, we sequenced the ITS2 region and analyzed the inversion frequencies of 289 Anopheles larvae specimens collected from three locations in the Moscow region. Five individual genomes for each of the two species were sequenced. We determined that An. messeae and An. daciae differ from each other by the frequency of polymorphic inversions. Inversion X1 was fixed in An. messeae but polymorphic in An. daciae populations. The genome sequence comparison demonstrated genome-wide divergence between the species, especially pronounced on the inversion-rich X chromosome (mean Fst = 0.331). The frequency of polymorphic autosomal inversions was higher in An. messeae than in An. daciae. We conclude that the X chromosome inversions play an important role in the genomic differentiation between the species. Our study determined that An. messeae and An. daciae are closely related species with incomplete reproductive isolation.

Cytogenetic analysis of Malpighian tubule polytene chromosomes of Culex pipiens (Diptera: Culicidae)

Genome ◽  
1998 ◽  
Vol 41 (6) ◽  
pp. 751-755 ◽  
Author(s):  
Anna Zambetaki ◽  
Nicole Pasteur ◽  
Penelope Mavragani-Tsipidou
Keyword(s):  
Culex Pipiens ◽  
Polytene Chromosomes ◽  
Malpighian Tubule ◽  
Malpighian Tubules ◽  
Molecular Cytogenetic ◽  
Routine Basis ◽  
Weak Points ◽  
Chromosome Maps ◽  
Global Vector ◽  
Polytene Nuclei

A simple technique is described for obtaining well-spread and readable Malpighian tubule polytene nuclei of Culex pipiens on a routine basis. Detailed polytene chromosome maps are presented with a description of the most prominent landmarks of each chromosome, the regions with asynapsis and the most frequent weak points identified in the polytene arms. Usable Malpighian tubule polytene chromosomes should facilitate molecular cytogenetic, genetic, and potentially biosystematic studies on this medically important global vector of viral inducing encephalitis.Key words: Culex pipiens, polytene chromosomes, Malpighian tubules, banding pattern, photomap.

Extraordinary and extensive karyotypic variation: A 48-fold range in chromosome number in the gall-inducing scale insect Apiomorpha (Hemiptera: Coccoidea: Eriococcidae)

Genome ◽  
2000 ◽  
Vol 43 (2) ◽  
pp. 255-263 ◽  
Author(s):  
Lyn G Cook
Keyword(s):  
Chromosome Number ◽  
Chromosomal Rearrangements ◽  
Chromosomal Polymorphism ◽  
Chromosomal Evolution ◽  
Scale Insect ◽  
Closely Related Species ◽  
Host Genus ◽  
Species Complexes ◽  
Species Groups ◽  
Karyotypic Variation

Chromosome number reflects strong constraints on karyotype evolution, unescaped by the majority of animal taxa. Although there is commonly chromosomal polymorphism among closely related taxa, very large differences in chromosome number are rare. This study reports one of the most extensive chromosomal ranges yet reported for an animal genus. Apiomorpha Rübsaamen (Hemiptera: Coccoidea: Eriococcidae), an endemic Australian gall-inducing scale insect genus, exhibits an extraordinary 48-fold variation in chromosome number with diploid numbers ranging from 4 to about 192. Diploid complements of all other eriococcids examined to date range only from 6 to 28. Closely related species of Apiomorpha usually have very different karyotypes, to the extent that the variation within some species- groups is as great as that across the entire genus. There is extensive chromosomal variation among populations within 17 of the morphologically defined species of Apiomorpha indicating the existence of cryptic species-complexes. The extent and pattern of karyotypic variation suggests rapid chromosomal evolution via fissions and (or) fusions. It is hypothesized that chromosomal rearrangements in Apiomorpha species may be associated with these insects' tracking the radiation of their speciose host genus, Eucalyptus. Key words: Apiomorpha, cytogenetics, chromosomal evolution, holocentric.

CHROMOSOME ANALYSIS OF SCHISTOSOMA RODHAINI (TREMATODA: SCHISTOSOMATIDAE)

1980 ◽  
Vol 22 (1) ◽  
pp. 143-147 ◽  
Author(s):  
Kristine H. Atkinson
Keyword(s):  
Pericentric Inversion ◽  
Chromosome Pair ◽  
Mitotic Chromosome ◽  
Nucleolar Organizer ◽  
Chromosome Analysis ◽  
Host Tissue ◽  
Similar Species ◽  
Group I ◽  
Field Identification ◽  
Hypotonic Treatment

The chromosome number of Schistosoma rodhaini Brumpt is 2n = 16, with apparent sexual dimorphism quantifiable in chromosome pair no. 2. A method for dissociating host tissue coupled with hypotonic treatment yields permanent mitotic chromosome spreads with very defined centromere regions. The karyotype of S. rodhaini is very similar to that of its sibling species, S. mansoni Sambon, except there is a pericentric inversion in the S. rodhaini nucleolar organizer chromosome pair, S. rodhaini does not have any satellited chromosomes, and S. rodhaini has slightly shorter short arms of the group I chromosomes than S. mansoni. This distinction of chromosomes of similar species of schistosomes will be important for field identification of parasites and in elucidating the evolution of the schistosomes.

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