scholarly journals Interactions of saprotrophic fungi with tree roots: can we observe the emergence of novel ectomycorrhizal fungi?

2017 ◽  
Vol 215 (2) ◽  
pp. 511-513 ◽  
Author(s):  
Petr Baldrian ◽  
Petr Kohout
Forests ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 427 ◽  
Author(s):  
Tod Ramsfield ◽  
Philip-Edouard Shay ◽  
Tony Trofymow ◽  
Colin Myrholm ◽  
Bradley Tomm ◽  
...  

Soil fungi are important components of boreal forest ecosystems; for example, saprotrophic fungi regulate nutrient cycling, and mycorrhizal species facilitate nutrient uptake by plants. This study aimed to assess soil fungal communities in a reclaimed area and an adjacent natural mixedwood forest and to identify the distribution of taxa available for seedling colonization. Soil fungal microbiomes were assessed along three transects (from 10 m inside the interior of the undisturbed forest to 40 m inside the reclaimed area) and in the roots of small aspen within the natural forest. Using high-throughput deoxyribonucleic acid (DNA) sequencing of internal transcribed spacer amplicons, a total of 2796 unique fungal taxa were detected across fine roots, forest floor, and mineral soils collected along the transects, whereas 166 taxa were detected in the aspen roots from the natural forest. Within the interior of the forest, ectomycorrhizal fungi were more common, whereas in the reclaimed areas, arbuscular mycorrhizae and saprophytes were more common. This survey showed that natural areas of adjacent undisturbed forest can act as a source of ectomycorrhizal fungi for dispersal into reclaimed areas. Notably, soil fungal taxa colonizing the root systems of small aspen included species that are specifically associated with soils from the undisturbed forest (primarily ectomycorrhizae) or the reclaimed clearing (saprotrophs and plant pathogens).


2015 ◽  
Vol 17 ◽  
pp. 205-212 ◽  
Author(s):  
Claus Bässler ◽  
Jacob Heilmann-Clausen ◽  
Peter Karasch ◽  
Roland Brandl ◽  
Hans Halbwachs

Author(s):  
S. Clausing ◽  
L. E. Likulunga ◽  
D. Janz ◽  
H. Y. Feng ◽  
D. Schneider ◽  
...  

AbstractN and P are essential macronutrients for all organisms. How shifts in the availability of N or P affect fungal communities in temperate forests is not well understood. Here, we conducted a factorial P × N fertilization experiment to disentangle the effects of nutrient availability on soil-residing, root-associated, and ectomycorrhizal fungi in beech (Fagus sylvatica) forests differing in P availability. We tested the hypotheses that in P-poor forests, P fertilization leads to enhanced fungal diversity in soil and roots, resulting in enhanced P nutrition of beech, and that N fertilization aggravates P shortages, shifting the fungal communities toward nitrophilic species. In response to fertilizer treatments (1 × 50 kg ha−1 P and 5 × 30 kg ha−1 N within 2 years), the labile P fractions increased in soil and roots, regardless of plant-available P in soil. Root total P decreased in response to N fertilization and root total P increased in response to P addition at the low P site. Ectomycorrhizal species richness was unaffected by fertilizer treatments, but the relative abundances of ectomycorrhizal fungi increased in response to P or N addition. At the taxon level, fungal assemblages were unaffected by fertilizer treatments, but at the order level, different response patterns for saprotrophic fungi among soil and ectomycorrhizal fungi on roots were found. Boletales increased in response to P, and Russulales decreased under N + P addition. Our results suggest that trait conservatism in related species afforded resistance of the resident mycobiome composition to nutritional imbalances.


1995 ◽  
Vol 73 (6) ◽  
pp. 807-816 ◽  
Author(s):  
Sigurd M. Såstad

The macrofungal Basidiomycete community of a Pinus sylvestris forest was investigated in 50 plots, 2 × 2 m, to see how vegetation composition and space influenced the distribution of saprotrophic and ectomycorrhizal fungi. Mantel tests and partial Mantel tests revealed a relationship between total cover of the field layer and mycorrhizal fungi, and total cover of the bottom layer and saprotrophic fungi. These results are consistent with the predictions that mycorrhizal fungi are mainly influenced by plant species present in the root zone, whereas saprotrophic fungi are mainly influenced by the plant species of the bottom layer. Variation in the abundance of tree species did not influence the distribution of macrofungal species at this scale. The spatial patterns of fungal distribution found in this study did not deviate significantly from a random distribution. Indirect ordination showed that the ectomycorrhizal fungi mainly responded to a gradient in cover of the field layer, whereas the saprotrophs seemed to respond to a complex gradient of cover of field and bottom layer, moisture, and paludification. A direct ordination using both vegetation and fungi descriptors indicated that some of the covariation in the saprotrophic fungi and the bottom layer might be coordinated responses to changes in the field layer. A considerably higher β diversity was found among the fungi than in the vegetation. Key words: basidiomycetes, saprotrophic fungi, mycorrhizal fungi, fungi–vegetation relationships, Mantel test, ordination.


2007 ◽  
Vol 85 (4) ◽  
pp. 385-393 ◽  
Author(s):  
Andrew W. Wilson ◽  
Erik A. Hobbie ◽  
David S. Hibbett

Calostoma cinnabarinum Corda belongs to the suborder Sclerodermatineae (Boletales), which includes many well-known ectomycorrhizal basidiomycetes, but the genus Calostoma has been described as saprotrophic. This study combines isotopic, molecular, and morphological techniques to determine the mode of nutrition of C. cinnabarinum. δ13C and δ15N measurements were compared among co-occurring C. cinnabarinum, ectomycorrhizal fungi, saprotrophic fungi, and ectomycorrhizal plants. Isotopic profiles of C. cinnabarinum resembled those of ectomycorrhizal fungi but not those of saprotrophic fungi. For molecular analyses, ectomycorrhizal root tips were extracted from soil cores collected beneath C. cinnabarinum fruit bodies. Nuclear ribosomal internal transcribed spacer (nrITS) sequences were obtained from ectomycorrhizal root tips using fungal-specific primers and screened against C. cinnabarinum nrITS sequences. Ectomycorrhizal root tips had nrITS sequences that matched C. cinnabarinum fruiting bodies. Root tips colonized by C. cinnabarinum were also described morphologically. Several morphological characters were shared between fruiting bodies and ectomycorrhizal root tips of C. cinnabarinum. Results of isotopic, molecular, and morphological analyses indicate that C. cinnabarinum is ectomycorrhizal. Molecular analysis and observations of plant associations suggest that C. cinnabarinum forms ectomycorrhizae with Quercus .


2020 ◽  
Author(s):  
S. Clausing ◽  
L.E. Likulunga ◽  
D. Janz ◽  
H.Y. Feng ◽  
D. Schneider ◽  
...  

AbstractIn forest soils, the pools of N and P available for microbes and plants are strongly dependent on soil properties. Here, we conducted a P and N fertilization experiment to disentangle the effects of nutrient availability on soil-residing, root-associated and ectomycorrhizal fungi in beech (Fagus sylvativa) forests differing in P availability. We tested the hypothesis that in P-poor forests, P fertilization leads to enhanced fungal diversity in soil and roots, resulting in enhanced P nutrition of beech and that N fertilization aggravates P shortage, shifting the fungal communities towards nitrophilic species. In response to fertilizer treatments (1x 50 kg ha−1 P, 5x 30 kg ha−1 N within 2 years), the labile P fractions increased in soil and roots, regardless of plant-available P in soil. Root total P decreased in response to N fertilization and root total P increased at the low P site in response to P addition. The relative abundances of ectomycorrhizal fungi, but not their species richness, increased in response to P or N addition in comparison with that of saprotrophic fungi. While some fungal orders (Trechisporales, Atheliales, Cantharellales) were moderately decreased in response to fertilizer treatments, Boletales increased in response to P and Russulaes to N addition. N or P fertilization resulted in functional trade-off, shifting away from saprotrophic towards symbiotrophic potential. Our results suggest that chronic exposure of forest ecosystems to increased nutrient inputs may overcome the resistance of the resident mycobiome structures resulting in nutritional imbalance and loss of forest ecosystem services.


2021 ◽  
Author(s):  
Carmen Alicia Rivera Pérez ◽  
Dennis Janz ◽  
Dominik Schneider ◽  
Rolf Daniel ◽  
Andrea Polle

Mineral nitrogen (N) is a major nutrient showing strong fluctuations in the environment due to anthropogenic activities. Acquisition and translocation of N to forest trees is achieved by highly diverse ectomycorrhizal fungi (EMF) living in symbioses with their host roots. Here, we examined colonized root tips to characterize the entire root-associated fungal community by DNA metabarcoding-Illumina sequencing of the fungal ITS2 molecular marker and used RNA sequencing to target metabolically active fungi and the plant transcriptome after N application. The study was conducted with beech (Fagus sylvatica L), a dominant tree species in central Europe, grown in native forest soil. We demonstrate strong enrichment of 15N from nitrate or ammonium in the ectomycorrhizal roots by stable isotope labeling. The relative abundance of the EMF members in the fungal community was correlated with their transcriptional abundances. The fungal metatranscriptome covered KEGG and KOG categories similar to model fungi and did not reveal significant changes related to N metabolization but species-specific transcription patterns, supporting trait stability. In contrast to the resistance of the fungal metatranscriptome, the transcriptome of the host exhibited dedicated nitrate- or ammonium-responsive changes with upregulation of transporters and enzymes required for nitrate reduction and drastic enhancement of glutamine synthetase transcript levels, indicating channeling of ammonium into the pathway for plant protein biosynthesis. Our results support that self-composed fungal communities associated with tree roots buffer nutritional signals in their own metabolism but do not shield plants from high environmental N.


1979 ◽  
Vol 57 (11) ◽  
pp. 1203-1205 ◽  
Author(s):  
Iwan Ho ◽  
Bratislav Zak

Six ectomycorrhizal fungi commonly associated with Douglas-fir were tested in vitro for acid phosphatase activity by measuring the amount of p-nitrophenyl phosphate converted to p-nitrophenol and by examining their production of isoenzymes detectable by starch gel electrophoresis. Both test methods showed acid phosphatase activity to be highest in Hebeloma crustuliniforme, followed by progressively lower activity in Laccaria laccata, Amanita muscaria, and Thelephora terrestris. Rhizopogon vinicolor and Piloderma bicolor showed low activity. We discuss the significance of these fungi in the utilization of complex phosphates by tree roots.


2004 ◽  
Vol 82 (6) ◽  
pp. 781-800 ◽  
Author(s):  
Steven A Trudell ◽  
Robert L Edmonds

We characterized the epigeous macrofungus communities in two old-growth conifer forests by collecting sporocarps. Despite the similarity in dominant tree species in the two forests, the macrofungus communities were very different. At the drier, nitrogen-poor Deer Park area, the macrofungi were dominated by ectomycorrhizal species in the genera Cortinarius, Tricholoma, Hydnellum, Suillus, and Sarcodon. At the wetter, higher nitrogen Hoh Valley, the macrofungi were characterized by ectomycorrhizal species in different genera, such as Inocybe, Russula, Amanita, Boletus, and Phaeocollybia, and saprotrophic fungi accounted for a greater proportion of the community. Species richness was similar at the two areas, but sporocarp production was much higher at Deer Park. We propose that (i) these community differences developed over a long time; (ii) they are largely related to differences in ecosystem moisture and nitrogen abundance; and (iii) within the ectomycorrhizal fungi, possible causal mechanisms involve mycelial morphology and carbon allocation within the symbioses. The apparent response to relatively small but presumably long-term differences in nitrogen abundance suggests that sporocarp production by macrofungi could be an effective bioindicator and should be considered in determination of critical loads for atmospheric nitrogen deposition to temperate and boreal forests.Key words: critical nitrogen loads, ectomycorrhizal fungi, macrofungi, macrofungus communities, nitrogen, old-growth conifer forests.


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