scholarly journals Regional climates shape the biogeographic history of a broadly distributed freshwater crab species complex

2021 ◽  
Author(s):  
Boyang Shi ◽  
Da Pan ◽  
Yufang Sun ◽  
Xiaorui Liu ◽  
Xiulin Lv ◽  
...  
Keyword(s):  
Species Complex ◽  
Freshwater Crab ◽  
Crab Species ◽  
Biogeographic History ◽  
History Of ◽  
Regional Climates

scholarly journals Genetic structure and biogeographic history of the Bicknell’s Thrush/ Gray-cheeked Thrush species complex

The Auk ◽  
2019 ◽  
Vol 137 (1) ◽  
Author(s):  
Alyssa M Fitzgerald ◽  
Jason Weir ◽  
Joel Ralston ◽  
Ian G Warkentin ◽  
Darroch M Whitaker ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Late Pleistocene ◽  
Species Complex ◽  
Extended Period ◽  
Genetic Data ◽  
Distribution Models ◽  
Biogeographic History ◽  
History Of ◽  
Low Levels ◽  
Bicknell's Thrush

Abstract We examined species limits, admixture, and genetic structure among populations in the Bicknell’s Thrush (Catharus bicknelli)–Gray-cheeked Thrush (C. minimus) species complex to establish the geographic and temporal context of speciation in this group, which is a model system in ecology and a high conservation priority. We obtained mitochondrial ND2 sequences from 186 Bicknell’s Thrushes, 77 Gray-cheeked Thrushes, and 55 individuals of their closest relative, the Veery (C. fuscescens), and genotyped a subset of individuals (n = 72) at 5,633 anonymous single nucleotide polymorphic (SNP) loci. Between-species sequence divergence was an order of magnitude greater than divergence within each species, divergence was dated to the late Pleistocene (420 kbp) based on Bayesian coalescence estimation, and a coalescent model (IMa) revealed almost no gene flow between species based on ND2. SNP data were consistent with mitochondrial results and revealed low levels of admixture among species (3 of 37 Bicknell’s Thrushes, no Gray-cheeked Thrushes, and no Veeries were >2% admixed). Species distribution models projected to the Last Glacial Maximum suggest that Bicknell’s Thrush and Gray-cheeked Thrush resided in primarily allopatric refugia in the late Pleistocene, consistent with the genetic data that support reproductive isolation over an extended period of time. Our genetic data suggest that both species underwent demographic expansions, possibly as they expanded out of Pleistocene refugia into their current ranges. We conclude that Bicknell’s Thrush and Gray-cheeked Thrush are 2 distinct species-level lineages despite low levels of Gray-cheeked Thrush introgression in Bicknell’s Thrushes, and divergence has been maintained by a long history of allopatry in subtly different habitats. Their unique phylogeography among boreal forest birds indicates that either cryptic species breaks in eastern North America are still undiscovered, or another factor, such as divergent natural selection, high migratory connectivity, or interspecific competition, played a role in their divergence.

scholarly journals Phylogeny and Biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)

2020 ◽  
Vol 45 (2) ◽  
pp. 361-374
Author(s):  
Jessica Nayara Carvalho Francisco ◽  
Lúcia G. Lohmann
Keyword(s):  
Species Complex ◽  
Middle Eocene ◽  
Morphological Data ◽  
Species Limits ◽  
Test Species ◽  
Multispecies Coalescent ◽  
Biogeographic History ◽  
Coalescent Approach ◽  
History Of ◽  
Migration Pathways

Abstract—The Amazon houses a large proportion of the overall biodiversity currently found on Earth. Despite that, our knowledge of Amazonian biodiversity is still limited. In this study, we reconstruct the phylogeny of Pachyptera (Bignoniaceae), a genus of neotropical lianas that is centered in the Amazon. We then use this phylogenetic framework to re-evaluate species limits and study the biogeographic history of the genus. We sampled three molecular markers (i.e. ndhF, rpl32-trnL, and PepC) and 51 individuals representing the breadth of morphological variation and geographic distribution of all species recognized in the genus. We used this information to reconstruct phylogenetic relationships among individuals of Pachyptera using Bayesian and maximum likelihood approaches. The resulting molecular phylogeny was used as a basis to test species limits within the P. kerere species complex using a cpDNA coalescent approach (GMYC). GMYC identified five potential species within the P. kerere species complex that were subsequently evaluated in the light of morphology. Morphological data supported the recognition of four of the five potential species suggested by GMYC, all of which were also supported by a multispecies coalescent model in a Bayesian framework. The phylogeny of Pachyptera was time-calibrated and used to reconstruct the biogeographical history of the genus. We identified historically important migration pathways using our comprehensive cpDNA dataset and a Bayesian stochastic search variable selection (BSSVS) framework. Our results indicate that the genus originated in lowland Amazonia during the Middle Eocene, and subsequently occupied Central America and the Andes. Most of the diversification of Pachyptera occurred in the Miocene, a period of intense perturbations in South America.

scholarly journals Amazonia as the Origin and Diversification Area of Didelphidae (Mammalia: Metatheria), and a Review of the Fossil Record of the Clade

2021 ◽  
Author(s):  
Mariela C. Castro ◽  
Murilo J. Dahur ◽  
Gabriel S. Ferreira
Keyword(s):  
South America ◽  
Amazon Basin ◽  
Parametric Models ◽  
Isthmus Of Panama ◽  
Biogeographic History ◽  
Early Diversification ◽  
Northern Portion ◽  
History Of ◽  
Environmental Events ◽  
Fossil Records

AbstractDidelphidae is the largest New World radiation of marsupials, and is mostly represented by arboreal, small- to medium-sized taxa that inhabit tropical and/or subtropical forests. The group originated and remained isolated in South America for millions of years, until the formation of the Isthmus of Panama. In this study, we present the first reconstruction of the biogeographic history of Didelphidae including all major clades, based on parametric models and stratified analyses over time. We also compiled all the pre-Quaternary fossil records of the group, and contrasted these data to our biogeographic inferences, as well as to major environmental events that occurred in the South American Cenozoic. Our results indicate the relevance of Amazonia in the early diversification of Didelphidae, including the divergence of the major clades traditionally ranked as subfamilies and tribes. Cladogeneses in other areas started in the late Miocene, an interval of intense shifts, especially in the northern portion of Andes and Amazon Basin. Occupation of other areas continued through the Pliocene, but few were only colonized in Quaternary times. The comparison between the biogeographic inference and the fossil records highlights some further steps towards better understanding the spatiotemporal evolution of the clade. Finally, our results stress that the early history of didelphids is obscured by the lack of Paleogene fossils, which are still to be unearthed from low-latitude deposits of South America.

Evolution and biogeographic history of the Saguinus mystax group (Primates, Callithrichidae)

2021 ◽  
Vol 83 (2) ◽  
Author(s):  
Daysa Athaydes ◽  
Cayo A. R. Dias ◽  
Renato Gregorin ◽  
Fernando A. Perini
Keyword(s):  
Saguinus Mystax ◽  
Biogeographic History ◽  
History Of

Pseudallescheria boydii Species Complex Fungal Rhinitis and Sinusitis in a Dog

2011 ◽  
Vol 47 (5) ◽  
pp. 365-369 ◽  
Author(s):  
Kristine Bruskiewicz ◽  
Martin Crawford-Jakubiak
Keyword(s):  
Species Complex ◽  
Human Pathogen ◽  
Pseudallescheria Boydii ◽  
Mixed Breed ◽  
History Of

A 9 yr old male castrated Australian shepherd mixed-breed dog with a 3 mo history of intermittent unilateral epistaxis was diagnosed with Pseudallescheria boydii species complex fungal rhinitis and sinusitis. This fungal organism is a rare cause of disease in dogs and an emerging human pathogen. The dog was successfully treated with topical clotrimazole.

Mitochondrial introgression and complex biogeographic history of the genus Picea

2015 ◽  
Vol 93 ◽  
pp. 63-76 ◽  
Author(s):  
Jin-Hua Ran ◽  
Ting-Ting Shen ◽  
Wen-Juan Liu ◽  
Pei-Pei Wang ◽  
Xiao-Quan Wang
Keyword(s):  
Biogeographic History ◽  
Mitochondrial Introgression ◽  
History Of
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