scholarly journals Using the Tea Bag Index to unravel how human pharmaceuticals affect aquatic microbial activity

2019 ◽  
Author(s):  
William Ross Hunter ◽  
Ashley Williamson ◽  
Judith Maria Sarneel

AbstractThe constant release of complex mixture of pharmaceuticals, including antimicrobials and endocrine disruptors, has the potential to affect aquatic microbial metabolism and alter biogeochemical cycling of carbon and nutrients. Here we advance the Tea Bag Index (TBI) for decomposition by using it in a series of contaminant exposure experiments testing how interactions between two human pharmaceuticals, the broad spectrum antibiotic trimethoprim and the artificial estrogen 17a-Ethinylestradiol (EE2), affects microbial activity in an aquatic system. The TBI is a citizen science tool used to test microbial activity by measuring the differential degradation of green and rooibos tea as proxies for labile and recalcitrant organic matter decomposition. Exposure to trimethoprim and EE2 had significant independent negative effects upon decomposition of labile organic matter (green tea), suggesting additive effects upon microbial activity. Exposure to EE2 alone negatively affected the degradation of more recalcitrant organic matter (rooibos tea). Consequently, trimethoprim and EE2 stabilized labile organic matter against microbial degradation and restricted degradation rates. We propose that the method outlined could provide a powerful tool for testing the impacts of multiple interacting pollutants upon microbial activity, at a range of scales, across aquatic systems and over biogeochemically relevant time scales.

2020 ◽  
Author(s):  
Gera Van Os ◽  
Karin Pepers ◽  
Jaap Bloem ◽  
Joeke Postma ◽  
Johnny Visser

<p>Worldwide there is an enormous interest in microbial indicators for soil quality, since this reflects the potential capacity for soil ecosystem functions i.e. nutrient cycles, carbon storage, biodiversity and resilience to climate change. Farmers are anxious to measure the effects of different soil management practices in order to improve soil quality and attain sustainable food production. Despite the rapid developments in (molecular) measurement techniques, adequately validated and affordable methods for field measurements on soil microbial activity are still lacking. Nowadays, farmers participate in campaigns to bury cotton undies in order to measure biological activity in their fields (Soil your undies).  If there’s not much left of the undies after a couple of months, this supposedly indicates good soil health. Of course this is by no means a quantitative nor validated indicator.</p><p>An elegant, cheap and simple method to measure biological activity in soil is the Tea Bag Index (TBI). This method was developed to determine the global variation in decomposition rate of organic matter by the soil microflora as influenced by abiotic circumstances. The TBI consists of two parameters describing decomposition and stabilization of organic matter by measuring weight loss of green tea and rooibos tea bags that have been buried in the soil for three months. The method is designed to discriminate contrasting ecosystems and, within ecosystems, differences in factors such as soil temperature and moisture content (Keuskamp et al. 2013, doi: 10.1111/2041-210X.12097).</p><p>Our research aimed to assess the possibility to use the TBI as an indicator for soil microbial activity, considering its sensitivity and robustness to discriminate between agricultural soil management practices that are known to have a significant impact on soil microbial diversity and activity. The responsiveness to soil pasteurization and organic amendments was investigated under both controlled and field conditions. The TBI decomposition rate differed significantly between both tea varieties (green tea > rooibos tea). Organic amendments had little or no effect. The TBI-results were plotted against some more established biochemical indicators which are sensitive to soil management and often related to microbial biomass, i.e. hot water extractable carbon, potentially mineralizable nitrogen and fungal biomass. Results are discussed, as well as factors which complicate the interpretation of TBI data with respect to soil microbial activity.</p>


2009 ◽  
Vol 6 (4) ◽  
pp. 6889-6948 ◽  
Author(s):  
W. M. Kemp ◽  
J. M. Testa ◽  
D. J. Conley ◽  
D. Gilbert ◽  
J. D. Hagy

Abstract. The incidence and intensity of hypoxic waters in coastal aquatic ecosystems has been expanding in recent decades coincident with eutrophication of the coastal zone. Because of the negative effects hypoxia has on many organisms, extensive efforts have been made to reduce the size and duration of hypoxia in many coastal waters. Although it has been broadly assumed that reductions in nutrient loading rates would reverse eutrophication and consequently, hypoxia, recent analyses of historical data from European and North American coastal systems suggest little evidence for simple linear response trajectories. We review existing data, analyses, and models that relate variations in the extent and intensity of hypoxia to changes in loading rates for inorganic nutrients and labile organic matter. We also assess existing knowledge of physical and ecological factors regulating oxygen in coastal marine waters and examine a broad range of examples where hypoxia responses to reductions in nutrient (or organic matter) inputs have been documented. Of the 22 systems identified where concurrent time series of loading and O2 were available, half displayed relatively clear and direct recoveries following remediation. We explored in detail 5 well-studied systems that have exhibited complex, non-linear responses to loading, including apparent "regime shifts." A summary of these analyses suggests that O2 conditions improved rapidly and linearly in systems where remediation focused on organic inputs from sewage plants, which were the primary drivers of hypoxia. In larger more open systems where diffuse nutrient loads are more important in fueling O2 depletion and where climatic influences are pronounced, responses to remediation tend to follow non-linear trends that may include hysteresis and time-lags. Improved understanding of hypoxia remediation requires that future studies use comparative approaches and consider multiple regulating factors including: (1) the dominant temporal scales of the hypoxia, (2) the relative contributions of inorganic and organic nutrients, (3) the influence of shifts in climatic and oceanographic processes, and (4) the roles of feedback interactions whereby O2-sensitive biogeochemistry, food-webs, and habitats influence the nutrient and algal dynamics that regulate O2 levels.


2021 ◽  
Author(s):  
Itamar Shabtai ◽  
Johannes Lehmann ◽  
Taryn Bauerle

<p>Plants allocate an estimated 11% of the C that they fixate as root exudates, a complex mixture of compounds that helps engineer the plant’s subterranean habitat. Root exudates stabilize soil aggregates, improve water retention, and shape rhizosphere microbial community composition. Exudates are also thought to contribute to the formation of stable mineral-associated organic matter. However, the function and fate of exudates along the soil profile may differ. We hypothesize that in topsoils with highly active microbial populations and mineral surfaces saturated with organic matter, root exudates may be rapidly intercepted and assimilated by soil microbes, and later adsorbed to surfaces as microbial necromass. But in subsoils with low microbial activity, exudates may directly adsorb on unsaturated mineral surfaces. The magnitude of these divergent pathways can shape the role of root exudates in rhizosphere C cycling. However, little is known about how adsorption vs. decomposition processes at the root-soil interface control i) the chemical transformations of C occurring along the root-microbe-mineral pathway, and ii) the spatial distribution and heterogeneity of exuded and processed exudate C. Our objective was to investigate the effect of microbial activity, and reactive mineral surfaces on the spatial distribution and functional group chemistry of root exudates at the root-microbe-mineral interface.</p><p>We packed samples from O, A, B, and C horizons collected from a grassland Mollisol, into individual microcosms, and installed a porous microdialysis membrane which served as an artificial root. Through this root, we injected either root exudates collected from maize plants, or dissolved organic carbon extracted from plant litter collected at the site. This comparison allowed us to study the dynamics of organic inputs entering the soil profile from the litter layer vs. directly from the roots. We destructively sampled the microcosms and obtained intact cross sections containing the artificial root and surrounding mineral/pore structures at different time points throughout the experiment. Here, we will present results obtained using synchrotron-radiation FTIR-microscopy of the temporal evolution, and spatial distribution of organic matter functional group chemistry in an artificial rhizosphere.</p>


Author(s):  
Ole Martin Eklo ◽  
Marit Almvik ◽  
Halvard Hole ◽  
Åge Arild Nyborg ◽  
Marianne Stenrød ◽  
...  

In this report the following topic of pesticides and fate in Norway has been outlined covering: 1. Factors influencing degradation of pesticides. 2. Description and update of datasets on soil and climate in agricultural areas. 3. Normalization of field degradation data as input for modelling fate. 4. Use of degradation data from Norway in model scenarios. Norwegian laboratory degradation studies indicate that increased soil organic carbon content enhances degradation rates of pesticides that show low sorption (e.g. metalaxyl, bentazone) ,due to increased microbial activity. Whereas pesticides that sorb moderately to strongly to soil (e.g. boscalid, propiconazole), display reduced degradation as organic carbon increases as a consequence of sorption and reduced bioavailability. Recent DegT50 field studies display a large variation in fungicide degradation rates from Klepp in the south to Tromsø in the north. For the mobile herbicide bentazone, no effect of climate was observed, as degradation rates were coherent at all sites, probably due to rapid leaching. The climate (temperature) seems to be more determinate for fungicide degradation rates than the soil type. Fungicide degradation was slow at two northern sites having low soil temperatures, even though microbial biomass was hugely different at the sites. How soil temperature and moisture affects microbial activity and diversity in various soils, climates and crops is important for the understanding of degradation capacity in Norwegian soils and fields. Microbial activity could be related to both soil, climate and crops/cropping regime – as well as to the nature of the soil organic matter. The fact that DegT50 values are very much shorter than laboratory values at the same reference conditions, may point to some systematic error in the normalization procedure (e.g. the default simplifications in the Walker and Arrhenius equations), or that the parameters affecting degradation in the laboratory are different from the parameters that affect degradation in the field. Consequently, lab-derived and field-derived DegT50matrix values should be compared and interpreted with care. The large variations in normalized DegT50 values obtained in field studies in Norway as well as in other regions in Norway cannot be explained by differences in the associated parameters characterizing the soil and microbial community. It is therefore not possible to determine if a certain field study is more or less representative for “Norwegian conditions”. As a conservative approach, the highest, normalized DegT50 from the European field studies should be selected for the Norwegian risk assessment independent on geographic vicinity. As an alternative, when a sufficient number of data are available, a high percentile (e.g 80 or 90-percentile) should be used rather than the geomean. Each agricultural region in Norway is dominated by one specific soil type for each region. Albeluvisol, Cambisol, Umbrisol, Stagnosol and Histosol in respectively Eastern Norway south, Eastern Norway north, Rogaland, Trøndelag and North of Norway. New updates for Norway include especially Umbrisols and Histosols rich in organic matter. Albeluvisols, Cambisols and Stagnosols are representing the main soil types in the agricultural area in Norway. These are also included in the groundwater (Rustad and Heia) and surface water scenarios (Syverud) developed for Norway. Experience from pesticide fate in the organic rich soils on the south west coast and north of Norway is limited. Compared to the “normal” temperature and precipitation from 1961 to 1990 with a “new normal” from 1991 to 2014, the climate has changed. For the five described agricultural areas in Norway, annual temperature has increased in average 1 degrees for all five regions and seasons for the new normal. The rainfall has increased for all seasons and regions except for the Northern Norway (Holt in Tromsø) and summer season at Kvithamar (Trøndelag) with lower precipitation in June to September. Annually the precipitation has increased approximately 100 mm in average. The existing Norwegian scenarios in groundwater and surface water seem to be representative in the meaning of covering the main soil types in the central agricultural areas in South Eastern Norway. However there are no scenarios covering areas of South West and North of Norway containing soil with high organic content, slow degradation and heavy rainfall. Vulnerable areas are not included in these scenarios as the idea of the representativity of soil was to include the main soil types covering the most of the agricultural production areas. The vulnerable areas deals with smaller areas and has to be treated separately. Vulnerable areas are areas with high groundwater levels and sandy soil and mobile pesticides. Hilly areas with clay soil represent high risk of surface runoff with strongly sorbed pesticides. We are lacking experience from areas with high content of organic matter causing slow degradation, combined with heavy rainfall.  A database with representative soils and climates for various crops should be established in Norway and utilized in a targeted risk assessment approach. Then, the degradation of pesticides to be used in for example fruit/berry cropping, could be evaluated in respect to representative and vulnerable soils and climates in fruit/berry regions in Norway. A correct risk assessment of pesticide degradation in Norwegian agricultural soils should take the varying climatic zones, the diversity in agricultural soils and crops in Norway into consideration before formulated pesticides are approved. Risk assessment should be based on soils and climates most prevalent for the crop to which the pesticide is to be applied, in addition, vulnerable areas with slow degradation and/or high leaching/runoff risk should be recognized.


2009 ◽  
Vol 113 (3-4) ◽  
pp. 219-226 ◽  
Author(s):  
Christian Lønborg ◽  
Keith Davidson ◽  
Xosé A. Álvarez–Salgado ◽  
Axel E.J. Miller

2010 ◽  
Vol 44 (11) ◽  
pp. 4076-4082 ◽  
Author(s):  
Brent G. Pautler ◽  
André J. Simpson ◽  
David J. Mcnally ◽  
Scott F. Lamoureux ◽  
Myrna J. Simpson

2010 ◽  
Vol 7 (11) ◽  
pp. 3473-3489 ◽  
Author(s):  
J. Holtvoeth ◽  
H. Vogel ◽  
B. Wagner ◽  
G. A. Wolff

Abstract. Organic matter preserved in Lake Ohrid sediments originates from aquatic and terrestrial sources. Its variable composition reflects climate-controlled changes in the lake basin's hydrology and related organic matter export, i.e. changes in primary productivity, terrestrial plant matter input and soil erosion. Here, we present first results from lipid biomarker investigations of Lake Ohrid sediments from two near-shore settings: site Lz1120 near the southern shore, with low-lying lands nearby and probably influenced by river discharge, and site Co1202 which is close to the steep eastern slopes. Variable proportions of terrestrial n-alkanoic acids and n-alkanols as well as compositional changes of ω-hydroxy acids document differences in soil organic matter supply between the sites and during different climate stages (glacial, Holocene, 8.2 ka cooling event). Changes in the vegetation cover are suggested by changes in the dominant chain length of terrestrial n-alkanols. Effective microbial degradation of labile organic matter and in situ contribution of organic matter derived from the microbes themselves are both evident in the sediments. We found evidence for anoxic conditions within the photic zone by detecting epicholestanol and tetrahymanol from sulphur-oxidising phototrophic bacteria and bacterivorous ciliates and for the influence of a settled human community from the occurrence of coprostanol, a biomarker for human and animal faeces (pigs, sheep, goats), in an early Holocene sample. This study illustrates the potential of lipid biomarkers for future environmental reconstructions using one of Europe's oldest continental climate archives, Lake Ohrid.


2014 ◽  
Vol 11 (11) ◽  
pp. 2977-2990 ◽  
Author(s):  
E. Bayraktarov ◽  
C. Wild

Abstract. Sediments are fundamental for the function of oligotrophic coral reef ecosystems because they are major places for organic matter recycling. The Tayrona National Natural Park (TNNP, Colombian Caribbean) is located between the population center Santa Marta (>455 000 inhabitants) in the southwest and several river mouths in the east. Here, coral reef sediments experience pronounced changes in environmental conditions due to seasonal coastal upwelling, but knowledge of relevant spatiotemporal effects on organic matter supply to the sediments and recycling processes is not available. Therefore, sediment traps were deployed monthly over 14 months complemented by assessment of sedimentary properties (e.g., porosity, grain size, content of particulate organic matter and pigments) and sedimentary O2 demand (SOD) at water-current-exposed and sheltered sites along distance gradients (12–20 km) to Santa Marta and the eastern river mouths (17–27 km). Findings revealed that seasonal upwelling delivered strong (75–79% of annual supply) pulses of labile organic matter mainly composed of fresh phytoplankton detritus (C : N ratio 6–8) to the seafloor. Sedimentary chlorophyll a contents and SOD increased significantly with decreasing distance to the eastern rivers, but only during upwelling. This suggests sedimentary organic matter supply controlled by nutrient-enriched upwelling waters and riverine runoff rather than by the countercurrent-located city of Santa Marta. Organic matter pulses led to significantly higher SOD (more than 30%) at the water-current-sheltered sites as compared to the exposed sites, ensuing a rapid recycling of the supplied labile organic matter in the permeable silicate reef sands.


2013 ◽  
Vol 68 (5) ◽  
pp. 991-998 ◽  
Author(s):  
Ting Zhang ◽  
Bo Wu ◽  
Na Sun ◽  
Yong Ye ◽  
Huaixia Chen

Pharmaceuticals and personal care products (PPCPs) have drawn popular concerns recently as an emerging class of aquatic contaminants. In this study, adsorption and degradation of four selected PPCPs, metronidazole, tinidazole, caffeine and chloramphenicol, have been investigated in the laboratory using two agricultural soils in China and sediment from Changjiang River. Adsorption tests using a batch equilibrium method demonstrated that adsorption of all tested chemicals in soils could be well described with Freundlich equation, and their adsorption affinity on soil followed the order of chloramphenicol > caffeine > tinidazole > metronidazole. Generally, higher Kf value was associated with soils which had higher organic matter contents (except for caffeine acid in this study). Degradation of selected PPCPs in soils generally followed first-order exponential decay kinetics, and half-lives ranging from 0.97 to 10.21 d. Sterilization generally decreased the degradation rates, indicating that microbial activity played a significant role in the degradation in soils. The degradation rate constant decreased with increasing initial chemical concentrations in soil, implying that the microbial activity was inhibited with high chemical loading levels.


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