scholarly journals Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin

2009 ◽  
Vol 106 (8) ◽  
pp. 2612-2616 ◽  
Author(s):  
Ayana Tomita ◽  
Tokushi Sato ◽  
Kouhei Ichiyanagi ◽  
Shunsuke Nozawa ◽  
Hirohiko Ichikawa ◽  
...  
Micron ◽  
2004 ◽  
Vol 35 (1-2) ◽  
pp. 67-69 ◽  
Author(s):  
Karin Nienhaus ◽  
Gerd U Nienhaus

Biochemistry ◽  
2003 ◽  
Vol 42 (32) ◽  
pp. 9647-9658 ◽  
Author(s):  
Karin Nienhaus ◽  
Pengchi Deng ◽  
Jan M. Kriegl ◽  
G. Ulrich Nienhaus

Sensors ◽  
2021 ◽  
Vol 21 (2) ◽  
pp. 643
Author(s):  
Martina De Landro ◽  
Ignacio Espíritu García-Molina ◽  
Manuel Barberio ◽  
Eric Felli ◽  
Vincent Agnus ◽  
...  

This work presents the potential of hyperspectral imaging (HSI) to monitor the thermal outcome of laser ablation therapy used for minimally invasive tumor removal. Our main goal is the establishment of indicators of the thermal damage of living tissues, which can be used to assess the effect of the procedure. These indicators rely on the spectral variation of temperature-dependent tissue chromophores, i.e., oxyhemoglobin, deoxyhemoglobin, methemoglobin, and water. Laser treatment was performed at specific temperature thresholds (from 60 to 110 °C) on in-vivo animal liver and was assessed with a hyperspectral camera (500–995 nm) during and after the treatment. The indicators were extracted from the hyperspectral images after the following processing steps: the breathing motion compensation and the spectral and spatial filtering, the selection of spectral bands corresponding to specific tissue chromophores, and the analysis of the areas under the curves for each spectral band. Results show that properly combining spectral information related to deoxyhemoglobin, methemoglobin, lipids, and water allows for the segmenting of different zones of the laser-induced thermal damage. This preliminary investigation provides indicators for describing the thermal state of the liver, which can be employed in the future as clinical endpoints of the procedure outcome.


Author(s):  
I. B. Trindade ◽  
G. Hernandez ◽  
E. Lebègue ◽  
F. Barrière ◽  
T. Cordeiro ◽  
...  

AbstractIron is a fundamental element for virtually all forms of life. Despite its abundance, its bioavailability is limited, and thus, microbes developed siderophores, small molecules, which are synthesized inside the cell and then released outside for iron scavenging. Once inside the cell, iron removal does not occur spontaneously, instead this process is mediated by siderophore-interacting proteins (SIP) and/or by ferric-siderophore reductases (FSR). In the past two decades, representatives of the SIP subfamily have been structurally and biochemically characterized; however, the same was not achieved for the FSR subfamily. Here, we initiate the structural and functional characterization of FhuF, the first and only FSR ever isolated. FhuF is a globular monomeric protein mainly composed by α-helices sheltering internal cavities in a fold resembling the “palm” domain found in siderophore biosynthetic enzymes. Paramagnetic NMR spectroscopy revealed that the core of the cluster has electronic properties in line with those of previously characterized 2Fe–2S ferredoxins and differences appear to be confined to the coordination of Fe(III) in the reduced protein. In particular, the two cysteines coordinating this iron appear to have substantially different bond strengths. In similarity with the proteins from the SIP subfamily, FhuF binds both the iron-loaded and the apo forms of ferrichrome in the micromolar range and cyclic voltammetry reveals the presence of redox-Bohr effect, which broadens the range of ferric-siderophore substrates that can be thermodynamically accessible for reduction. This study suggests that despite the structural differences between FSR and SIP proteins, mechanistic similarities exist between the two classes of proteins. Graphic abstract


2020 ◽  
Vol 152 ◽  
pp. S1060
Author(s):  
Q. Roos ◽  
Z. Faiz ◽  
M. Dieters ◽  
H.P. Van der Laan ◽  
L.A. Den Otter ◽  
...  

BIOPHYSICS ◽  
2012 ◽  
Vol 57 (3) ◽  
pp. 282-284
Author(s):  
V. M. Tishchenko
Keyword(s):  

Author(s):  
B. White ◽  
A. Santhanam ◽  
Z. Wang ◽  
S. Jani ◽  
J. Lamb ◽  
...  

2004 ◽  
Vol 11 (04) ◽  
pp. 401-409
Author(s):  
Marcin Turek ◽  
Piotr Rozmej

Time evolution of radial wave packets built from the eigenstates of Dirac equation for a hydrogenic system is considered. Radial wave packets are constructed from the states of different n quantum numbers and the same lowest angular momentum. In general they exhibit a kind of breathing motion with dispersion and (partial) revivals. Calculations show that for some particular preparations of the wave packet one can observe interesting effects in spin motion, coming from inherent entanglement of spin and orbital degrees of freedom. These effects manifest themselves through some oscillations in the mean values of spin operators and through changes of spatial probability density carried by upper and lower components of the wave function. It is also shown that the characteristic time scale of predicted effects (called T ls ) is much smaller for radial wave packets than in other cases, reaching values comparable to (or even less than) the time scale for the wave packet revival.


Author(s):  
Bruno Madore ◽  
Gabriela Belsley ◽  
Cheng-Chieh Cheng ◽  
Frank Preiswerk ◽  
Marie Foley Kijewski ◽  
...  

Abstract Breathing motion can displace internal organs by up to several cm; as such, it is a primary factor limiting image quality in medical imaging. Motion can also complicate matters when trying to fuse images from different modalities, acquired at different locations and/or on different days. Currently available devices for monitoring breathing motion often do so indirectly, by detecting changes in the outline of the torso rather than the internal motion itself, and these devices are often fixed to floors, ceilings or walls, and thus cannot accompany patients from one location to another. We have developed small ultrasound-based sensors, referred to as ‘organ configuration motion’ (OCM) sensors, that attach to the skin and provide rich motion-sensitive information. In the present work we tested the ability of OCM sensors to enable respiratory gating during in vivo PET imaging. A motion phantom involving an FDG solution was assembled, and two cancer patients scheduled for a clinical PET/CT exam were recruited for this study. OCM signals were used to help reconstruct phantom and in vivo data into time series of motion-resolved images. As expected, the motion-resolved images captured the underlying motion. In Patient #1, a single large lesion proved to be mostly stationary through the breathing cycle. However, in Patient #2, several small lesions were mobile during breathing, and our proposed new approach captured their breathing-related displacements. In summary, a relatively inexpensive hardware solution was developed here for respiration monitoring. Because the proposed sensors attach to the skin, as opposed to walls or ceilings, they can accompany patients from one procedure to the next, potentially allowing data gathered in different places and at different times to be combined and compared in ways that account for breathing motion.


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