scholarly journals Catalase model systems. Decomposition of hydrogen peroxide catalysed by mesoferrihaem, deuteroferrihaem, coproferrihaem and haematoferrihaem

1978 ◽  
Vol 174 (3) ◽  
pp. 893-900 ◽  
Author(s):  
H Hatzikonstantinou ◽  
S B Brown
Keyword(s):  
Mechanism Of Action ◽  
Rate Constants ◽  
Inverse Relationship ◽  
Ph Dependence ◽  
Catalytic Decomposition ◽  
Order Rate Constant ◽  
Model Systems ◽  
Ph Variation ◽  
Order Of Magnitude ◽  
Decomposition Of H2o2

The catalytic decomposition of H2O2 by deuteroferrihaem, mesoferrihaem, coproferrihaem and haematoferrihaem was studied as a model for the mechanism of action of catalase. For haematoferrihaem, anomalous but reproducible results were obtained, which could not be adequately explained. For each of the other ferrihaems studied, both monomeric and dimeric species catalysed decomposition, although the activity of monomer (aM) was much greater than that of dimer (aD). The pH variation of aD in the range 6.5–11 was consistent with an inverse dependence on [H+]1/2. The molecular mechanism whereby such a dependence could be achieved is not apparent. A study of the pH-dependence of aM in the range 6.5–11 revealed a linear inverse relationship with [H+]. This is interpreted in terms of attack by HO2- on ferrihaem monomer. The specific pH-independent rate constants for this reaction were in the order coproferrihaem greater than protoferrihaem greater than or equal to mesoferrihaem congruent to deuteroferrihaem. The order of magnitude of these rate constants is the same as that for catalysis by Fe(H2O)63+ and the second-order rate constant for decomposition of H2O2 by catalase. The implications on the mechanism of action of catalase are discussed.

scholarly journals The role of peroxide in haem degradation. A study of the oxidation of ferrihaems by hydrogen peroxide

1978 ◽  
Vol 174 (3) ◽  
pp. 901-907 ◽  
Author(s):  
S B Brown ◽  
H Hatzikonstantinou ◽  
D G Herries
Keyword(s):  
Hydrogen Peroxide ◽  
Catalytic Activity ◽  
Linear Dependence ◽  
Rate Constants ◽  
Experimental Error ◽  
Ph Dependence ◽  
Monomeric Species ◽  
Order Of Magnitude ◽  
Computer Based

The oxidation of ferrihaems by H2O2 was studied as a model for haem catabolism. Rates of ferrihaem oxidation were evaluated by using a new computer-based method that measures the loss in catalytic activity of the ferrihaem during oxidation. For protoferrihaem, deuteroferrihaem, coproferrihaem and mesoferrihaem, oxidation proceeded via the monomeric species and no dimer contribution was detectable. The pH-dependence of oxidation was studied in the range 6.5–11. Within experimental error, the data were compatible with an inverse linear dependence on [H+]. This was interpreted in terms of attack by HO2- on monomeric ferrihaem. The specific second-order rate constants for oxidation of monomeric species by HO2- were of the same order of magnitude for all the ferrihaems, and were in the sequence coproferrihaem greater than protoferrihaem greater than mesoferrihaem congruent to deuteroferrihaem. A model is suggested involving formation of a ferrihaem monomerperoxide complex, which may either dissociate with the formation of a peroxidatic intermediate or be involved in an intramolecular oxidation of the ferrihaem. Haem catabolism may occur via the same or a similar intermediate.

scholarly journals The pH-dependence of second-order rate constants of enzyme modification may provide free-reactant pKa values

1977 ◽  
Vol 167 (3) ◽  
pp. 859-862 ◽  
Author(s):  
K Brocklehurst ◽  
H B F Dixon
Keyword(s):  
Rate Constant ◽  
Rate Constants ◽  
Ph Dependence ◽  
Order Rate Constant ◽  
Second Order ◽  
Quasi Equilibrium ◽  
Pka Values ◽  
First Order ◽  
Order Rate ◽  
Parallel Reactions

1. Reactions of enzymes with site-specific reagents may involve intermediate adsorptive complexes formed by parallel reactions in several protonic states. Accordingly, a profile of the apparent second-order rate constant for the modification reaction (Kobs., the observed rate constant under conditions where the reagent concentration is low enough for the reaction to be first-order in reagent) against pH can, in general, reflect free-reactant-state molecular pKa values only if a quasi-equilibrium condition exists around the reactive protonic state (EHR) of the adsorptive complex. 2. Usually the condition for quasi-equilibrium is expressed in terms of the rate constants around EHR: (formula: see text) i.e. k mod. less than k-2. This often cannot be assessed directly, particularly if it is not possible to determine kmod. 3. It is shown that kmod. must be much less than k-2, however, if kobs. (the pH-independent value of kobs.) less than k+2. 4. Since probable values of k+2 greater than 10(6)M-1.S-1 and since values of kobs. for many modification reactions less than 10(6)M-1.S-1, the equilibrium assumption should be valid, and kinetic study of such reactions should provide reactant-state pKa values. 5. This may not apply to catalyses, because for them the value of kcat./Km may exceed 5 X 10(5)M-1.S-1. 6. The conditions under which the formation of an intermediate complex by parallel pathways may come to quasi-equilibrium are discussed in the Appendix.

scholarly journals Alkylation of glyceraldehyde-3-phosphate dehydrogenase with haloacetylphosphonates. An unusual pH-dependence

1991 ◽  
Vol 275 (3) ◽  
pp. 767-773 ◽  
Author(s):  
Y K Li ◽  
J Boggaram ◽  
L D Byers
Keyword(s):  
Isotope Effect ◽  
Rate Constant ◽  
Ph Dependence ◽  
Thiol Group ◽  
Order Rate Constant ◽  
Acidic Group ◽  
Irreversible Inhibitors ◽  
Effects Of Ph ◽  
Solvent Isotope ◽  
Bell Shaped Curve

Two new alkylating reagents, chloro- and bromo-acetylphosphonate, were found to be very effective thiol-blocking reagents. The pH-dependence of the reaction of BAP with 2,4-dinitrothiophenol (25 degrees C, I 0.5) shows a tailing bell-shaped curve (with a plateau at high pH) characteristic of two ionizing groups: the thiol group (pKa 3.2) and the phosphonate group (pKa2 4.6). The rate constant for the reaction of the monoanionic inhibitor with dinitrothiophenolate (k2 = 7 M-1.s-1) is 120 times larger than that of the dianionic species. The haloacetylphosphonates were found to be irreversible inhibitors of glyceraldehyde-3-phosphate dehydrogenase from a variety of sources. They react with the active-site thiol group (Cys-149) and are half-site reagents with yeast glyceraldehyde-3-phosphate dehydrogenase. Thus, when two of the identical four subunits are modified the enzyme is catalytically inactive. The effects of pH (7-10), 2H2O and NAD+ on the reaction with the yeast enzyme were examined in detail. NAD+ enhances the alkylation rates. The second-order rate constant does not show a simple sigmoidal dependence on pH but rather a tailing bell-shaped curve (pKa 7.0 and 8.4) qualitatively similar to that obtained with dinitrothiophenol. There is no significant solvent isotope effect on the limiting rate constants and a normal isotope effect on the two pKa values. The results are consistent with the more reactive enzyme species containing a thiolate and an acidic group that may either donate a proton to the dianionic haloacetylphosphonate or orient the inhibitor.

Reduction of the oxidized bacteriochlorophyll dimer in reaction centers by ferrocene is dependent upon the driving force

2007 ◽  
Vol 11 (03) ◽  
pp. 205-211 ◽  
Author(s):  
László Kálmán ◽  
Arlene L. M. Haffa ◽  
JoAnn C. Williams ◽  
Neal W. Woodbury ◽  
James P. Allen
Keyword(s):  
Electron Transfer ◽  
Rate Constants ◽  
Ph Dependence ◽  
Photosynthetic Bacterium ◽  
Energy Difference ◽  
Reaction Centers ◽  
Free Energy Difference ◽  
Midpoint Potential ◽  
Bacteriochlorophyll Dimer ◽  
Purple Photosynthetic Bacterium

The rates of electron transfer from ferrocene to the oxidized bacteriochlorophyll dimer, P , in reaction centers from the purple photosynthetic bacterium Rhodobacter sphaeroides, were measured for a series of mutants in which the P / P + midpoint potentials range from 410 to 765 mV (Lin et al. Proc. Natl. Acad. Sci. USA 1994; 91: 10265-10269). The observed rate constant for each mutant was found to be linearly dependent upon the ferrocene concentration up to 50 μM. The electron transfer is described as a second order reaction with rate constants increasing from 1.5 to 35 × 106 M -1. s -1 with increasing P / P + midpoint potential. This dependence was tested for three additional mutants, each of which exhibits a pH dependence of the P / P + midpoint potential due to an electrostatic interaction with an introduced carboxylic group (Williams et al. Biochemistry 2001; 40: 15403-15407). For these mutants, the pH dependence of the bimolecular rate constants followed a sigmoidal pattern that could be described with a Henderson-Hasselbalch equation, attributable to the change of the free energy difference for the reaction due to deprotonation of the introduced carboxylic side chains.

scholarly journals Ionization characteristics of the Cys-25/His-159 interactive system and of the modulatory group of papain: resolution of ambiguity by electronic perturbation of the quasi-2-mercaptopyridine leaving group in a new pyrimidyl disulphide reactivity probe

1993 ◽  
Vol 290 (1) ◽  
pp. 289-296 ◽  
Author(s):  
G W Mellor ◽  
E W Thomas ◽  
C M Topham ◽  
K Brocklehurst
Keyword(s):  
Ph Dependence ◽  
Order Rate Constant ◽  
Ion Pair ◽  
Catalytic Site ◽  
Alkaline Media ◽  
Interactive System ◽  
Data Set ◽  
Pka Value ◽  
Compound Ii ◽  
Pair State

1. A new thiol-specific reactivity probe 4,4′-dipyrimidyl disulphide [compound (VII), m.p. 110 degrees C, pKa of its monohydronated form 0.91] was synthesized and used to resolve the ambiguity of interpretation of the behaviour of papain (EC 3.4.22.2) in alkaline media known to depend to varying extents on two ionizations with pKa values approx. 8.0-8.5 and > or = 9.5 respectively. 2. A new extensive pH-second-order rate constant (k) data set for the reaction of papain with 2-(acetamido)-ethyl 2′-pyridyl disulphide (IV) demonstrated the existence of a striking rate maximum at pH approx. 4, the independence of k around pH 8 and the increase in k with increase in pH across a pKa value of 10.0, behaviour similar to that of other 2-pyridyl disulphides (R-S-S-2-Py) that lack key substrate-like binding sites in R. 3. Although the simplest interpretation of the pKa value of 10.0 assigns it to the formation of (Cys-25)-S-/(His-159)-Im from the ion-pair state of the papain catalytic site, another interpretation may be conceived in which this pKa value is assigned to another group remote from the catalytic site, the state of ionization of which modulates catalytic-site behaviour. This alternative assignment is shown to require compensating effects in the pH region around 8 such that the formation of (Cys-25)-S-/(His-159)-Im across pKa 8.0-8.5 is without net kinetic effect in the reactions of simple 2-pyridyl disulphides such as compound (IV) and 2,2′-dipyridyl disulphide (II). 4. The lower basicity of compound (VII) relative to that of compound (II) (pKa 2.45) was predicted to diminish or abolish the compensation postulated as a possibility in reactions of 2-pyridyl disulphides because of the decreased effectiveness of reaction via a (His-159)-Im+H-assisted transition state. The characteristics of the pH-dependence of the reaction of papain with compound (VII) which are quite different from those for its reaction with compound (II) support both this prediction and the alternative assignment with a value of 8.3 for the pKa of the formation of (Cys-25)-S-/(His-159)-Im. 5. Evidence that the behaviour of papain towards both substrates and some substrate-derived time-dependent inhibitors is determined not only by the loss of the (Cys-25)-S-/(His-159)-Im+H ion-pair state by dehydronation with pKa 8.3 but also by another ionization of pKa approx. 10.0 is briefly discussed.

Application of S2O82-/FexOy Solid Super Acid as a Heterogeneous Fenton-Like Catalyst for the Degradation of Orange IV in Water

2010 ◽  
Vol 150-151 ◽  
pp. 1710-1713
Author(s):  
Ying Jie Zhang ◽  
Yue Xiao Tian ◽  
Da Peng Li ◽  
Guo Rui Liu ◽  
Li Zhang ◽  
...  
Keyword(s):  
Catalytic Activity ◽  
Iron Oxides ◽  
Catalytic Decomposition ◽  
Optimal Conditions ◽  
Heterogeneous Fenton ◽  
Effective Catalyst ◽  
Preparation Conditions ◽  
Super Acid ◽  
Decomposition Of H2o2

A new Fenton-like catalyst was prepared to degrade Orange IV in water by catalytic decomposition of H2O2. The optimal preparation conditions were discussed. The catalytic activity of catalyst was evaluated by the degradation of Orange IV and the decomposition of H2O2. The results show that solid super acid (S2O82-/FexOy) soaked in (NH4)2S2O8 is the most effective catalyst among the synthesized iron oxides soaked in other oxidants. The optimal conditions for solid super acid preparation are calcined at 500 for 2 h in the air.

Nitrogen removal characteristics of nitrification and denitrification filters

1994 ◽  
Vol 29 (10-11) ◽  
pp. 409-416 ◽  
Author(s):  
F. Çeçen ◽  
I. E. Gönenç
Keyword(s):  
Nitrogen Removal ◽  
Rate Constants ◽  
Order Rate Constant ◽  
Zero Order ◽  
Ammonia Removal ◽  
Nitrite Accumulation ◽  
Order Kinetic ◽  
Order Rate ◽  
In Series ◽  
Nitrification And Denitrification

The kinetics of nitrogen removal was studied in upflow submerged nitrification and denitrification filters in series. Nitrification followed first-, half-, and zero-order kinetics. For the half-order range the half-order rate constant was about 0.9gNH4-N1/2m−1/2d−1. The zero-order rate constants for the DO ranges of 2-3 mg/L and 4-5 mg/L were found as 0.47 gNH4-Nm−2d−1 and 1.82 gNH4-Nm−2d−1, respectively. In the zero-order region ammonia removal proceeded as a half-order reaction in oxygen concentration and the half-order rate constants were about 1.4-2.7 gO21/2m−1/2d−1. Nitrite accumulation reached a considerable degree at bulk oxygen to bulk ammonia ratios lower than 5 since the formation of nitrate was inhibited. Similar to nitrification half- and zero-order kinetic regions were also observed in denitrification. The half- and zero-order rate constants for carbon unlimited cases (influent COD/NOx-N>5) were about 0.23 gNOx-N1/2m−1/2d−1 and 1.9 gNOx-Nm−2d−1, respectively. The nitrite produced in the nitrification stage could be reduced in denitrification. The removal kinetics in the presence of nitrite was found to be similar to the kinetics when the influent consisted of nitrate only.

Deacylation of Fluorine-substituted trans-Cinnamoyl-α-chymotrypsins

1975 ◽  
Vol 53 (4) ◽  
pp. 513-518 ◽  
Author(s):  
J. T. Gerig ◽  
R. S. McLeod
Keyword(s):  
Rate Constants ◽  
Rate Effect ◽  
Ionization State ◽  
Hydrolysis Rates ◽  
Order Of Magnitude ◽  
Model Reactions

Deacylation of unsubstituted and of o-F-, m-F, p-F, α-F, pentafluoro-, p-methyl-, and p-trifluoromethyl-substituted trans-cinnamoyl- α-chymotrypsins has been studied from pH 4 to 8. The deacylation rate constants were found to depend upon the ionization state of a group on the enzyme with an apparent pK in the range 6.3–7.3. The hydrolysis rates of the correspondingly substituted p-nitrophenylcinnamate esters were determined at pH 10.6. Correlation of the data for these model reactions with the corresponding rates of enzyme deacylation suggests that the p-methyl-substituted acylenzyme is about an order of magnitude more reactive than expected while p-trifluoromethyl substitution results in deacylation at a rate 10 times slower than expected. The remaining substituents exert about the anticipated rate effect on deacylation.

scholarly journals The reactivities and ionization properties of the active-site dithiol groups of mammalian protein disulphide-isomerase

1991 ◽  
Vol 275 (2) ◽  
pp. 335-339 ◽  
Author(s):  
H C Hawkins ◽  
R B Freedman
Keyword(s):  
Rate Constant ◽  
Ph Dependence ◽  
Order Rate Constant ◽  
Second Order ◽  
Native Enzyme ◽  
Liver Protein ◽  
Thiol Groups ◽  
Protein Disulphide Isomerase ◽  
Order Rate ◽  
Reactive Groups

1. The number of reactive thiol groups in mammalian liver protein disulphide-isomerase (PDI) in various conditions was investigated by alkylation with iodo[14C]acetate. 2. Both the native enzyme, as isolated, and the urea-denatured enzyme contained negligible reactive thiol groups; the enzyme reduced with dithiothreitol contained two groups reactive towards iodoacetic acid at pH 7.5, and up to five reactive groups were detectable in the reduced denatured enzyme. 3. Modification of the two reactive groups in the reduced native enzyme led to complete inactivation, and the relationship between the loss of activity and the extent of modification was approximately linear. 4. Inactivation of PDI by alkylation of the reduced enzyme followed pseudo-first-order kinetics; a plot of the pH-dependence of the second-order rate constant for inactivation indicated that the essential reactive groups had a pK of 6.7 and a limiting second-order rate constant at high pH of 11 M-1.s-1. 5. Since sequence data on PDI show the presence within the polypeptide of two regions closely similar to thioredoxin, the data strongly indicate that these regions are chemically and functionally equivalent to thioredoxin. 6. The activity of PDI in thiol/disulphide interchange derives from the presence of vicinal dithiol groups in which one thiol group of each pair has an unusually low pK and high nucleophilic reactivity at physiological pH.

Oxidation of Nickel(II) and Manganese(II) by Peroxodisulfate in Aqueous Solution in the Presence of Molybdate. Crystal Structure of the (NH4)6[NiMo9O32].6H2O Product

1992 ◽  
Vol 45 (12) ◽  
pp. 1943 ◽  
Author(s):  
SJ Dunne ◽  
RC Burns ◽  
GA Lawrance
Keyword(s):  
Rate Constant ◽  
Linear Dependence ◽  
Ph Dependence ◽  
Order Rate Constant ◽  
X Ray Diffraction ◽  
X Ray ◽  
First Order ◽  
Oxidant Concentration ◽  
Ph Range ◽  
Kinetics Of

Oxidation of Ni2+,aq, by S2O82- to nickel(IV) in the presence of molybdate ion, as in the analogous manganese system, involves the formation of the soluble heteropolymolybdate anion [MMogO32]2- (M = Ni, Mn ). The nickel(IV) product crystallized as (NH4)6 [NiMogO32].6H2O from the reaction mixture in the rhombohedra1 space group R3, a 15.922(1), c 12.406(1) � ; the structure was determined by X-ray diffraction methods, and refined to a residual of 0.025 for 1741 independent 'observed' reflections. The kinetics of the oxidation were examined at 80 C over the pH range 3.0-5.2; a linear dependence on [S2O82-] and a non-linear dependence on l/[H+] were observed. The influence of variation of the Ni/Mo ratio between 1:10 and 1:25 on the observed rate constant was very small at pH 4.5, a result supporting the view that the precursor exists as the known [NiMo6O24H6]4- or a close analogue in solution. The pH dependence of the observed rate constant at a fixed oxidant concentration (0.025 mol dm-3) fits dequately to the expression kobs = kH [H+]/(Ka+[H+]) where kH = 0.0013 dm3 mol-1 s-1 and Ka = 4-0x10-5. The first-order dependence on peroxodisulfate subsequently yields a second-order rate constant of 0.042 dm3 mol-1 s-1. Under analogous conditions, oxidation of manganese(II) occurs eightfold more slowly than oxidation of nickel(II), whereas oxidation of manganese(II) by peroxomonosulfuric acid is 16-fold faster than oxidation by peroxodisulfate under similar conditions.

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