scholarly journals Storable N-phenylcarbamate palladacycles for rapid functionalization of an alkyne-encoded protein

2014 ◽  
Vol 50 (79) ◽  
pp. 11679-11682 ◽  
Author(s):  
Gang Cheng ◽  
Reyna K. V. Lim ◽  
Carlo P. Ramil ◽  
Qing Lin
Keyword(s):  
Rate Constant ◽  
Cross Coupling ◽  
Order Rate Constant ◽  
Second Order ◽  
Coupling Reactions ◽  
Order Rate ◽  
Cross Coupling Reactions ◽  
The Cross

Here we report the synthesis of storableN-phenylcarbamate palladacycles that showed robust reactivity in the cross-coupling reactions with an alkyne-encoded protein with a second-order rate constant approaching 19 770 ± 930 M−1s−1.

scholarly journals The reactivities and ionization properties of the active-site dithiol groups of mammalian protein disulphide-isomerase

1991 ◽  
Vol 275 (2) ◽  
pp. 335-339 ◽  
Author(s):  
H C Hawkins ◽  
R B Freedman
Keyword(s):  
Rate Constant ◽  
Ph Dependence ◽  
Order Rate Constant ◽  
Second Order ◽  
Native Enzyme ◽  
Liver Protein ◽  
Thiol Groups ◽  
Protein Disulphide Isomerase ◽  
Order Rate ◽  
Reactive Groups

1. The number of reactive thiol groups in mammalian liver protein disulphide-isomerase (PDI) in various conditions was investigated by alkylation with iodo[14C]acetate. 2. Both the native enzyme, as isolated, and the urea-denatured enzyme contained negligible reactive thiol groups; the enzyme reduced with dithiothreitol contained two groups reactive towards iodoacetic acid at pH 7.5, and up to five reactive groups were detectable in the reduced denatured enzyme. 3. Modification of the two reactive groups in the reduced native enzyme led to complete inactivation, and the relationship between the loss of activity and the extent of modification was approximately linear. 4. Inactivation of PDI by alkylation of the reduced enzyme followed pseudo-first-order kinetics; a plot of the pH-dependence of the second-order rate constant for inactivation indicated that the essential reactive groups had a pK of 6.7 and a limiting second-order rate constant at high pH of 11 M-1.s-1. 5. Since sequence data on PDI show the presence within the polypeptide of two regions closely similar to thioredoxin, the data strongly indicate that these regions are chemically and functionally equivalent to thioredoxin. 6. The activity of PDI in thiol/disulphide interchange derives from the presence of vicinal dithiol groups in which one thiol group of each pair has an unusually low pK and high nucleophilic reactivity at physiological pH.

scholarly journals Nano copper oxide catalyzed synthesis of symmetrical diaryl sulfides under ligand free conditions

2011 ◽  
Vol 7 ◽  
pp. 886-891 ◽  
Author(s):  
K Harsha Vardhan Reddy ◽  
V Prakash Reddy ◽  
A Ashwan Kumar ◽  
G Kranthi ◽  
YVD Nageswar
Keyword(s):  
Copper Oxide ◽  
Cross Coupling ◽  
Potassium Thiocyanate ◽  
Copper Oxide Nanoparticles ◽  
Aryl Halides ◽  
Oxide Nanoparticles ◽  
Coupling Reactions ◽  
Cross Coupling Reactions ◽  
Ligand Free ◽  
The Cross

Potassium thiocyanate acts as an efficient sulfur surrogate in C–S cross-coupling reactions mediated by recyclable copper oxide nanoparticles under ligand free conditions. This protocol avoids foul smelling thiols, for the synthesis of a variety of symmetrical diaryl sulfides, via the cross-coupling of different aryl halides with potassium thiocyanate, affording corresponding products in moderate to excellent yields.

Interactions of Heparin and a Covalently Linked Antithrombin Heparin Complex with the Components of the Fibrinolytic Pathway.

Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 2211-2211
Author(s):  
Ankush Chander ◽  
Helen M Atkinson ◽  
Leslie R. Berry ◽  
Anthony K.C. Chan
Keyword(s):  
Enzyme Activity ◽  
Rate Constant ◽  
Serine Proteases ◽  
Conflicts Of Interest ◽  
Order Rate Constant ◽  
Second Order ◽  
Coagulation Cascade ◽  
Simultaneous Addition ◽  
Order Rate ◽  
Significant Difference

Abstract Abstract 2211 Introduction: Unfractionated heparin (UFH) is used for the prophylaxis and treatment of thromboembolic diseases. UFH catalyzes inhibition by antithrombin (AT) of the serine proteases in the coagulation cascade. Additionally, UFH has been shown to interact with components of the fibrinolytic pathway in vitro. However UFH has several limitations which impact its utility as a therapeutic agent. Our lab has developed a novel covalent antithrombin-heparin complex (ATH) which inhibits most serine proteases of the coagulation pathway significantly faster when compared to non covalent mixtures of AT and UFH. However, the interactions of ATH with the components of the fibrinolytic pathway have not been studied before. Thus, the present study investigates possible serpin-heparin interactions of AT + UFH vs ATH within the fibrinolytic pathway. Methods: Discontinuous second order rate constant assays under pseudo-first order conditions were carried out to obtain second order rate constant (k2) values for the inhibition of plasmin by AT+UFH versus ATH. Briefly, at specific time intervals 20 nM plasmin was inhibited by 200 nM AT + 0–5000 nM UFH or by 200 nM ATH in the presence of 2.5 mM Ca2+. Reactions were neutralized by the simultaneous addition of a solution containing polybrene and plasmin substrate S-2366™ in buffer. Residual plasmin activity was measured and the final k2 values calculated. For experiments involving tPA, wells containing 40nM tPA and increasing concentrations of AT, UFH or ATH, at mole ratios ranging from 0 to 20:1, were incubated for 15 min. Reactions with tPA were neutralized by simultaneous addition of a solution containing either polybrene and tPA substrate, S-2288™ in buffer, (ATH and UFH) or only the substrate S-2288™ in buffer (AT). Enzyme activity was then determined by measuring rate of substrate cleavage (Vmax). Results: When plasmin was inhibited by AT in the absence of UFH, k2 values of 2.82×105 +/− 4.46×104 M−1 min−1 were observed. The k2 values increased with addition of successively higher concentrations of UFH up to a plateau with maximal k2 of 5.74×106 +/− 2.78×105 M−1 min−1 at a UFH concentration of 3000nM. For inhibition of plasmin by ATH, k2 values of 6.39 × 106 +/− 5.88 × 105 M−1 min−1 were observed. Inhibition of plasmin by ATH was not significantly different when compared to the highest k2 values obtained with UFH. (p=0.36) No statistically significant difference in tPA enzyme activity was observed when Vmax values for tPA alone were compared with those in the presence of AT, UFH or ATH. (p=0.932, p=0.085, p=0.31 respectively) Significance: The characteristic shape of the curve obtained from the k2vs. UFH plot suggests that the mechanism responsible for inhibition of plasmin by AT+UFH involves conformational activation of the serpin. The k2 values in this study for inhibition of plasmin by both AT+UFH and ATH were three orders of magnitude lower than k2 values for inhibition of thrombin or factor Xa. Furthermore these results suggest that tPA is not inhibited by AT + UFH or ATH, and is not influenced by the presence of UFH alone. Cumulatively, this indicates that the fibrinolytic pathway is minimally impacted by AT + UFH or ATH, allowing maximal antithrombotic potential to be achieved during anticoagulation. Overall, the favourable anticoagulant properties of ATH combined with the findings of this study strengthens the utility of the covalent conjugate over conventional UFH for the treatment of thromboembolic disorders. Disclosures: No relevant conflicts of interest to declare.

Ambident nucleophiles. II. Nitrogen-bonded and carbon-bonded σ-complex formation in the reaction of pyrrolide anions with 1,3,5-trinitrobenzene

1982 ◽  
Vol 60 (15) ◽  
pp. 1988-1995 ◽  
Author(s):  
J. C. Halle ◽  
M. J. Pouet ◽  
M. P. Simonnin ◽  
F. Debleds ◽  
F. Terrier
Keyword(s):  
Aqueous Solution ◽  
Complex Formation ◽  
Rate Constant ◽  
Order Rate Constant ◽  
Reactive Species ◽  
Second Order ◽  
Potassium Salts ◽  
Strong Base ◽  
Order Rate

Reaction of 1,3,5-trinitrobenzene (TNB) with pyrrole, 2,5-dimethyl pyrrole, and 2,4-dimethyl-3-ethyl pyrrole in the presence of a strong base (CH3O−) yields nitrogen- and/or carbon-bonded 1:1 σ-complexes in dimethylsulphoxide (DMSO). Depending on the stoichiometry of the reagents, 1:2 and 2:1 pyrrole–TNB diadducts are also formed. Identification of all complexes was effected by nmr. The reactive species are shown to be the pyrrolide ions and the results emphasize the ambident character of these anions towards an aromatic electrophile. Some of the complexes have been isolated as crystalline potassium salts when experiments are performed in acetonitrile. Among the isolable complexes, the kineticallybutnotthermodynamicallyfavored nitrogen adduct of pyrrole (5a) is remarkably unreactive. The second-order rate constant kH+ for is H+-catalyzed decomposition in aqueous solution is only 1 L mol−1 s−1 (t = 25 °C).

scholarly journals Kinetic studies on the nitrite reductase of Wolinella succinogenes

1986 ◽  
Vol 233 (2) ◽  
pp. 553-557 ◽  
Author(s):  
R Blackmore ◽  
T Brittain
Keyword(s):  
Rate Constant ◽  
Nitrite Reductase ◽  
Flash Photolysis ◽  
Spectral Characteristics ◽  
Order Rate Constant ◽  
Second Order ◽  
Stopped Flow ◽  
Dependent Manner ◽  
Wolinella Succinogenes ◽  
Order Rate

The six haem groups of the nitrite reductase enzyme isolated from Wolinella succinogenes are rapidly reduced by the addition of dithionite (S2O4(2-)). The reduction, however, is not homogeneous. Two of the haem groups, namely those that show spectral characteristics typical of five-co-ordinated haem groups, are reduced in a dithionite-concentration-dependent fashion with a rate limit of 1.5 S-1. The other four haem groups, which show spectral characteristics very similar to those of normal six-co-ordinate c-haem groups, reduce in a linear dithionite-concentration-dependent manner with a second-order rate constant of 150 M-1/2 X S-1. The ratio of the amplitudes of the two reduction phases observed in stopped-flow studies is found to be dependent on the concentration of dithionite used. A model is proposed to account for these observations, and computer simulations show that the model represents a good fit to the experimental data. The two haem groups with five-co-ordinate spectral characteristics bind CO. Flash photolysis of the CO complex exhibits one major recombination process with a linear dependence in rate on CO concentration with a second-order rate constant of 2 × 106 M-1 × S-1. By contrast, stopped-flow mixing of the reduced protein with CO shows a very complex pattern of combination, with most of the observed absorbance change associated with a concentration-independent step. These findings are rationalized in terms of structural changes in the protein consequent to ligand binding.

1,3,4-Oxadiazoles as luminescent materials for organic light emitting diodes via cross-coupling reactions

2016 ◽  
Vol 4 (37) ◽  
pp. 8596-8610 ◽  
Author(s):  
A. Paun ◽  
N. D. Hadade ◽  
C. C. Paraschivescu ◽  
M. Matache
Keyword(s):  
Light Emitting Diodes ◽  
Cross Coupling ◽  
Literature Survey ◽  
Organic Light Emitting Diodes ◽  
Luminescent Materials ◽  
Coupling Reactions ◽  
Light Emitting ◽  
Cross Coupling Reactions ◽  
Organic Light ◽  
The Cross

A literature survey of the cross-coupling reactions in the preparation of 1,3,4-oxadiazole compounds as useful materials for OLEDs is described.

Formation and spectra of flavin radicals in the presence of β-mercaptoethanol at pH 9 and 10

1984 ◽  
Vol 62 (3) ◽  
pp. 580-585 ◽  
Author(s):  
Parminder S. Surdhar ◽  
Rizwan Ahmad ◽  
David A. Armstrong
Keyword(s):  
Rate Constant ◽  
Rate Constants ◽  
Order Rate Constant ◽  
Second Order ◽  
Radical Species ◽  
Spectral Changes ◽  
Order Rate ◽  
Visible Spectra ◽  
Uv Visible ◽  
Presence And Absence

Spectral changes and rates of reaction of flavins and several radical species have been investigated at pH 7, 9, and 10 in the presence and absence of β-mercaptoethanol. The radicals •CO2−, eaq−, and [Formula: see text] reacted with FAD at pH 10 to give a spectrum of FAD •Fl− with rate constants of 7 ± 1 × 108 and 4 ± 1 × 108 M−1 s−1 for •CO2− and [Formula: see text] respectively. At pH 7 only •FlH was observed and at pH 9 a mixture of •FIH and •Fl−.Interactions between flavin radicals and sulphydryl at 10−4 M concentration did not cause perturbations in the uv–visible spectra until either the radical and/or the sulphydryl were ionized. With FAD at pH 9 or 10 and LFl at pH 10 the 370 nm peak of •Fl− was enhanced by about 15% and a second larger growth occurred near 450 nm in the presence of 10−4 to 10−2 M sulphydryl. We attribute this to the formation of labile intermediate RSHFl•−, which must also be involved in the reduction of Fl by [Formula: see text] at pH 9 or 10.The second order rate constant k13 for reaction of [Formula: see text] with FAD at pH 9 and 10 was found to be 4.2 ± 0.5 × 108 M−1 s−1 and 2.0 ± 0.4 × 108 M−1 s−1 respectively. The rate constant for the reaction between [Formula: see text] and LFl at pH 10 was slightly faster, 7 ± 1 × 108 M−1 s−1, probably reflecting the fact that LFl lacks the bulky negatively charged adenine dinucleotide group of FAD.

Functionalized α,β-ynones: efficient ligand for Cu catalyzed Sonogashira-type cross-coupling reaction

RSC Advances ◽  
2016 ◽  
Vol 6 (111) ◽  
pp. 109296-109300 ◽  
Author(s):  
Xian Wang ◽  
Zhenhua Wang ◽  
Zunyuan Xie ◽  
Guofang Zhang ◽  
Weiqiang Zhang ◽  
...  
Keyword(s):  
Coupling Reaction ◽  
Cross Coupling ◽  
Coupling Reactions ◽  
Terminal Alkynes ◽  
Cross Coupling Reactions ◽  
Aryl Iodides ◽  
Cross Coupling Reaction ◽  
The Cross

1,3-Yones as σ-, π-electron donating ligands significantly accelerated the cross-coupling reactions of aryl iodides with terminal alkynes, in which as low as 0.1 to 1 mol% of CuI were efficiently activated.

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