Prediction of Activation Energies for Hydrogen Abstraction by Cytochrome P450

2006 ◽  
Vol 49 (22) ◽  
pp. 6489-6499 ◽  
Author(s):  
Lars Olsen ◽  
Patrik Rydberg ◽  
Thomas H. Rod ◽  
Ulf Ryde
Keyword(s):  
Cytochrome P450 ◽  
Hydrogen Abstraction ◽  
Activation Energies

scholarly journals Effect of Nitrogen on the Growth of (100)-, (110)-, and (111)-Oriented Diamond Films

2020 ◽  
Vol 11 (1) ◽  
pp. 126
Author(s):  
Jen-Chuan Tung ◽  
Tsung-Che Li ◽  
Yen-Jui Teseng ◽  
Po-Liang Liu
Keyword(s):  
Growth Mechanism ◽  
Density Functional ◽  
Film Growth ◽  
Hydrogen Abstraction ◽  
Diamond Films ◽  
Activation Energies ◽  
Diamond Surface ◽  
Nitrogen Doped ◽  
Nitrogen Substitution ◽  
Diamond Film Growth

The aim of this research is the study of hydrogen abstraction reactions and methyl adsorption reactions on the surfaces of (100), (110), and (111) oriented nitrogen-doped diamond through first-principles density-functional calculations. The three steps of the growth mechanism for diamond thin films are hydrogen abstraction from the diamond surface, methyl adsorption on the diamond surface, and hydrogen abstraction from the methylated diamond surface. The activation energies for hydrogen abstraction from the surface of nitrogen-undoped and nitrogen-doped diamond (111) films were −0.64 and −2.95 eV, respectively. The results revealed that nitrogen substitution was beneficial for hydrogen abstraction and the subsequent adsorption of methyl molecules on the diamond (111) surface. The adsorption energy for methyl molecules on the diamond surface was generated during the growth of (100)-, (110)-, and (111)-oriented diamond films. Compared with nitrogen-doped diamond (100) films, adsorption energies for methyl molecule adsorption were by 0.14 and 0.69 eV higher for diamond (111) and (110) films, respectively. Moreover, compared with methylated diamond (100), the activation energies for hydrogen abstraction were by 0.36 and 1.25 eV higher from the surfaces of diamond (111) and (110), respectively. Growth mechanism simulations confirmed that nitrogen-doped diamond (100) films were preferred, which was in agreement with the experimental and theoretical observations of diamond film growth.

Reactions of trifluoromethyl radicals. V. Hydrogen abstraction from methyl acetate and methyl (2H3)Acetate

1980 ◽  
Vol 33 (7) ◽  
pp. 1437
Author(s):  
NL Arthur ◽  
PJ Newitt
Keyword(s):  
Isotope Effect ◽  
Rate Constants ◽  
Methoxy Group ◽  
Methyl Acetate ◽  
Kinetic Isotope Effect ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Temperature Range ◽  
Kinetic Isotope ◽  
Acetyl Group

Hydrogen abstraction by CF3 radicals from CH3COOCH3 and CD3COOCH3 has been studied in the temperature range 78-242°, and data have been obtained for the reactions: CF3 + CH3COOCH3 → CF3H+[C3H5O2] �������������(3) CF3 + CH3COOCH3 → CF3H+CH2COOCH3������������ (4) CF3 + CD3COOCH3 → CF3D+CD2COOCH3������������ (6) CF3 + CD3COOCH3 → CF3H+CD3COOCH2������������ (7) The corresponding rate constants, based on the value of 1013.36 cm3 mol-1 S-1 for the recombination of CF3 radicals, are given by (k in cm3 mol-1 s-1 and E in J mol-1): logk3 = (11.52�0.05)-(35430�380)/19.145T ���� (3)logk4 = (11.19�0.07)-(34680�550)/19.145T ���� (4)logk6 = (11.34�0.06)-(46490�490)/19.145T ���� (6)logk7 = (11.26�0.05)-(36440�400)/19.145T ���� (7)At 400 K, 59% of abstraction occurs from the acetyl group, and 41 % from the methoxy group. The kinetic isotope effect at 400 K for attack on the acetyl group is 25, due mainly to a difference in activation energies.

THE REACTIONS OF TRIFLUOROMETHYL RADICALS WITH PROPANE, n-BUTANE, AND ISOBUTANE

1956 ◽  
Vol 34 (2) ◽  
pp. 103-107 ◽  
Author(s):  
P. B. Ayscough ◽  
E. W. R. Steacie
Keyword(s):  
Rate Constants ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Methyl Radicals ◽  
Kcal Mole

A study of the reactions of trifluoromethyl radicals, produced by the photolysis of hexafluoroacetone, with propane, n-butane, and isobutane has been made. The rate constants of the hydrogen-abstraction reactions have been determined at temperatures between 27 °C and 119 °C and the activation energies found to be 6.5 ± 0.5, 5.1 ± 0.3, and 4.7 ± 0.3 kcal./mole respectively. These values are compared with those obtained for the reactions with methane and ethane, and with the corresponding reactions of methyl radicals.

Reactions of trifluoromethyl radicals. II. Hydrogen abstraction from monochlorosilane

1973 ◽  
Vol 26 (6) ◽  
pp. 1269 ◽  
Author(s):  
NL Arthur ◽  
BR Harman
Keyword(s):  
Hydrogen Atom ◽  
Rate Constant ◽  
Experimental Error ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Hydrogen Atom Abstraction ◽  
Temperature Range ◽  
Average Value

Hydrogen atom abstraction from SiH3Cl by CF3 radicals ����������������� CF3 + SiH3Cl → CF3H+SiH2Cl������������������� (1) has been studied in the temperature range 69-168�. The rate constant, based on Ayscough's value of 1013.36 cm3 mol-1 s-1 for the recombination of CF3 radicals, is given by (k1 in cm3 mol-1 s-1, E in kJ mol-1): ������������������ logk1 = (12.38�0.06)-(25.72�0.41)/2.303RT At 400 K, the rate constant for CF3 + SiH3Cl is greater than the average value reported for CF3+SiHCl3 by a factor of 3.6. This is due to a difference in A factors since the activation energies are equal within experimental error.

THE REACTION OF 2,2-DIPHENYL-1-PICRYLHYDRAZYL WITH SECONDARY AMINES

1958 ◽  
Vol 36 (12) ◽  
pp. 1729-1734 ◽  
Author(s):  
J. E. Hazell ◽  
K. E. Russell
Keyword(s):  
Secondary Amine ◽  
Rate Constants ◽  
Reaction Mechanisms ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Major Product ◽  
The Other ◽  
Secondary Amines ◽  
First Order ◽  
Kinetics Of

The reaction of DPPH (2,2-diphenyl-1-picrylhydrazyl) with N-phenyl-1-naphthylamine, N-phenyl-2-naphthylamine, diphenylamine, and methylaniline has been studied and has been shown to be primarily a hydrogen abstraction process. Two moles DPPH react with 1–1.15 moles secondary amine to give 1.7–1.8 moles 2,2-diphenyl-1-picrylhydrazine and further products.The reaction between DPPH and N-phenyl-1-naphthylamine is first order with respect to each reactant. The reaction of DPPH with the other amines is retarded by the major product 2,2-diphenyl-1-picrylhydrazine and the kinetics of the over-all reaction are complex. However second-order rate constants and activation energies have been obtained using initial rates of reaction. Possible reaction mechanisms are discussed.

Ab Initio Group Contribution Method for Activation Energies of Hydrogen Abstraction Reactions

ChemPhysChem ◽  
2006 ◽  
Vol 7 (1) ◽  
pp. 188-199 ◽  
Author(s):  
Mark Saeys ◽  
Marie-Françoise Reyniers ◽  
Veronique Van Speybroeck ◽  
Michel Waroquier ◽  
Guy B. Marin
Keyword(s):  
Ab Initio ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Group Contribution ◽  
Group Contribution Method

Prediction of Activation Energies for Aromatic Oxidation by Cytochrome P450†

2008 ◽  
Vol 112 (50) ◽  
pp. 13058-13065 ◽  
Author(s):  
Patrik Rydberg ◽  
Ulf Ryde ◽  
Lars Olsen
Keyword(s):  
Cytochrome P450 ◽  
Activation Energies

THE REACTIONS OF PERFLUOROETHYL RADICALS WITH HYDROGEN AND METHANE

1960 ◽  
Vol 38 (11) ◽  
pp. 2128-2135 ◽  
Author(s):  
S. J. W. Price ◽  
K. O. Kutschke
Keyword(s):  
Activation Energy ◽  
Hydrogen Abstraction ◽  
Frequency Factor ◽  
Activation Energies ◽  
Recombination Reaction ◽  
Limited Data ◽  
Kcal Mole ◽  
Fluorinated Radical

The reactions of C2F5 radicals, produced by the photolysis of (C2F5)2CO, with methane and hydrogen have been studied. Assuming zero activation energy for 2C2F5 → C4F10 the activation energies for C2F5 + CH4 → C2F5H + CH3 and C2F5 + H2 → C2F5H + H are 10.6 kcal/mole and 11.9 kcal/mole respectively. The present results have been correlated with data on the reactions of CF3, C3F7, and CH3 radicals with H2, D2, CH4, and C2H6. Taking Erecombination ≈ 0 in all cases and assuming the frequency factor for the recombination reaction varies little from radical to radical, the order of ease of hydrogen abstraction from a given substrate is CF3 > C2F5 > C3F7 > CH3. Similarly the ease of hydrogen abstraction from a substrate by a given fluorinated radical is C2H6 > H2 > CH4 > D2. A calculation based on very limited data indicates the reaction CH3 + C2F5COC2F5 → CH3COC2F5 + C2F5 may occur with an activation energy of approximately 7 kcal/mole.

Reactions of Methyl Radicals. II. Hydrogen Abstraction from Methyl Trifluoroacetate

1979 ◽  
Vol 32 (5) ◽  
pp. 1025 ◽  
Author(s):  
NL Arthur ◽  
PJ Newitt
Keyword(s):  
Rate Constants ◽  
Hydrogen Abstraction ◽  
Activation Energies ◽  
Methyl Radicals ◽  
Temperature Range ◽  
Cf3 Radical

Hydrogen abstraction from CF3COOCH3 and CH3COCH3 by CH3 radicals CF3 + CF3COOCH3 → CH4 + CF3COOCH2 (1) CF3 + CF3COOCH3 → CH4 + CH3COCH2 (3) has been studied in the temperature range 117-244�. The rate constants, based on the value of 1013.34 cm3 mol-1 s-1 for the recombination of CH3 radicals, are given by (k in cm3 mol-1 s-1 and E in J mol-1) : logk1 = (10.39 � 0.11)- (37680 � 880)/19.145T logk3 = (11.53 � 0.02)- (40590 � 170)/19.145T CF3COOCH3 is less susceptible to attack by CH3 radicals than by CF3 radicals by a factor of 2.8 at 400 K, due mainly to a difference in A factors, since the activation energies of the two reactions are almost identical. These results can be rationalized in terms of intermolecular polar repulsion between the CF3 radical and CF3COOCH3.

Sign in / Sign up

Export Citation Format

Share Document