Silver Ion Unusually Stabilizes the Structure of a Parallel-Motif DNA Triplex

2009 ◽  
Vol 131 (11) ◽  
pp. 3826-3827 ◽  
Author(s):  
Toshihiro Ihara ◽  
Tatsuaki Ishii ◽  
Norie Araki ◽  
Anthony W. Wilson ◽  
Akinori Jyo
Keyword(s):  
Silver Ion ◽  
Dna Triplex

Silver ion-stabilized DNA triplexes for completely enzyme-free and sensitive fluorescence detection of transcription factors via catalytic hairpin assembly amplification

2019 ◽  
Vol 7 (5) ◽  
pp. 763-767 ◽  
Author(s):  
Yao Qin ◽  
Daxiu Li ◽  
Ruo Yuan ◽  
Yun Xiang
Keyword(s):  
Transcription Factors ◽  
Fluorescence Detection ◽  
Silver Ion ◽  
Dna Triplexes ◽  
Catalytic Hairpin Assembly ◽  
Dna Triplex

A new silver ion-stabilized DNA triplex enables enzyme-free and amplified sensitive fluorescence detection of transcription factors.

scholarly journals Interaction of silver ion with CG.C+ base triplets in DNA triplex

2009 ◽  
Vol 53 (1) ◽  
pp. 19-20 ◽  
Author(s):  
T. Ihara ◽  
T. Ishii ◽  
A. Jyo
Keyword(s):  
Silver Ion ◽  
Dna Triplex

Antigene and Antiproliferative Effects of Triplex-Forming Oligonucleotide (TFO) Targeted on hmgb1 Gene in Human Hepatoma Cells

2020 ◽  
Vol 20 (16) ◽  
pp. 1943-1955
Author(s):  
Neelam Lohani ◽  
Moganty R. Rajeswari
Keyword(s):  
Apoptotic Cell ◽  
Isothermal Calorimetry ◽  
High Mobility ◽  
Rational Drug Design ◽  
Human Hepatoma Cells ◽  
Aberrant Expression ◽  
Bioinformatic Tools ◽  
Hmgb1 Expression ◽  
Dna Triplex ◽  
Triplex Forming Oligonucleotide

Background: The high mobility group box 1 (hmgb1) is one of the frequently over-expressed genes whose aberrant expression is reported in a number of human cancers. Various strategies are underway to inhibit hmgb1 expression in cancer cells having considerable therapeutic value. Objective: The present work involves selective transcriptional inhibition of the hmgb1 gene using selective DNA triplex structure-based gene technology. Here, the promoter region of the hmgb1 gene at position (-183 to -165) from the transcription start site as a target was selected using bioinformatic tools. Methods: The DNA triplex formation by the DNA of the target gene and TFO was confirmed using UV absorption spectroscopy, Circular Dichroism, and Isothermal Calorimetry. Results: Treatment of HepG2 cell with specific Triplex-forming Oligonucleotide significantly downregulated HMGB1 expression level at mRNA and protein levels by 50%, while the classical anticancer drugs, actinomycin/ adriamycin as positive controls showed 65% and the combination of TFO and drug decreased by 70%. The anti-proliferative effects of TFO correlated well with the fact of accumulation of cells in the Go phase and apoptotic cell death. Further, the binding of anti-cancer drugs to hmgb1 is stronger in DNA triplex state as compared to hmgb1 alone, suggesting the combination therapy as a better option. Conclusion: Therefore, the ability of hmgb1 targeted triplex-forming oligonucleotide in combination with triplex selective anticancer drug holds promise in the treatment of malignancies associated with hmgb1 overexpression. The result obtained may open up new vistas to provide a basis for the rational drug design and searching for high-affinity ligands with a high triplex selectivity.

scholarly journals Barley somatic embryogenesis-an attempt to modify variation induced in tissue culture

2021 ◽  
Vol 28 (1) ◽  
Author(s):  
Renata Orłowska
Keyword(s):  
Tissue Culture ◽  
Somatic Embryogenesis ◽  
Taguchi Method ◽  
Culture Conditions ◽  
Dna Demethylation ◽  
Silver Ion ◽  
Donor Plant ◽  
In Vitro Tissue Culture ◽  
Induced Variation

Abstract Background Somatic embryogenesis is a phenomenon carried out in an environment that generates abiotic stress. Thus, regenerants may differ from the source of explants at the morphological, genetic, and epigenetic levels. The DNA changes may be the outcome of induction media ingredients (i.e., copper and silver ions) and their concentrations and time of in vitro cultures. Results This study optimised the level of copper and silver ion concentration in culture media parallel with the induction medium longevity step towards obtaining barley regenerants via somatic embryogenesis with a minimum or maximum level of tissue culture-induced differences between the donor plant and its regenerants. The optimisation process is based on tissue culture-induced variation evaluated via the metAFLP approach for regenerants derived under varying in vitro tissue culture conditions and exploited by the Taguchi method. In the optimisation and verification experiments, various copper and silver ion concentrations and the different number of days differentiated the tested trials concerning the tissue culture-induced variation level, DNA demethylation, and de novo methylation, including symmetric (CG, CHG) and asymmetric (CHH) DNA sequence contexts. Verification of optimised conditions towards obtaining regenerants with minimum and maximum variability compared to donor plants proved useful. The main changes that discriminate optimised conditions belonged to DNA demethylation events with particular stress on CHG context. Conclusions The combination of tissue culture-induced variation evaluated for eight experimental trials and implementation of the Taguchi method allowed the optimisation of the in vitro tissue culture conditions towards the minimum and maximum differences between a source of tissue explants (donor plant) and its regenerants from somatic embryos. The tissue culture-induced variation characteristic is mostly affected by demethylation with preferences towards CHG sequence context.

scholarly journals Biofilm Inhibition and Antimicrobial Properties of Silver-Ion-Exchanged Zeolite A against Vibrio spp Marine Pathogens

2021 ◽  
Vol 11 (12) ◽  
pp. 5496
Author(s):  
Zarina Amin ◽  
Nur Ariffah Waly ◽  
Sazmal Effendi Arshad
Keyword(s):  
Electron Microscopy ◽  
Scanning Electron Microscopy ◽  
Antimicrobial Properties ◽  
Immune Defense ◽  
Silver Ion ◽  
Bacterial Disease ◽  
Zeolite A ◽  
Biofilm Inhibition ◽  
Volcanic Origin ◽  
Scanning Electron

A challenging problem in the aquaculture industry is bacterial disease outbreaks, which result in the global reduction in fish supply and foodborne outbreaks. Biofilms in marine pathogens protect against antimicrobial treatment and host immune defense. Zeolites are minerals of volcanic origin made from crystalline aluminosilicates, which are useful in agriculture and in environmental management. In this study, silver-ion-exchanged zeolite A of four concentrations; 0.25 M (AgZ1), 0.50 M (AgZ2), 1.00 M (AgZ3) and 1.50 M (AgZ4) were investigated for biofilm inhibition and antimicrobial properties against two predominant marine pathogens, V. campbelli and V. parahemolyticus, by employing the minimum inhibitory concentration (MIC) and crystal violet biofilm quantification assays as well as scanning electron microscopy. In the first instance, all zeolite samples AgZ1–AgZ4 showed antimicrobial activity for both pathogens. For V. campbellii, AgZ4 exhibited the highest MIC at 125.00 µg/mL, while for V. parahaemolyticus, the highest MIC was observed for AgZ3 at 62.50 µg/mL. At sublethal concentration, biofilm inhibition of V. campbelli and V. parahemolyticus by AgZ4 was observed at 60.2 and 77.3% inhibition, respectively. Scanning electron microscopy exhibited profound structural alteration of the biofilm matrix by AgZ4. This is the first known study that highlights the potential application of ion-exchanged zeolite A against marine pathogens and their biofilms.

ChemInform Abstract: Synthesis and Silver Ion Catalyzed Reactions of 3,3′-Ethylenebicyclopropenyl.

ChemInform ◽  
1987 ◽  
Vol 18 (3) ◽  
Author(s):  
F. C. PEELEN ◽  
I. J. LANDHEER ◽  
W. H. DE WOLF ◽  
F. BICKELHAUPT
Keyword(s):  
Silver Ion ◽  
Catalyzed Reactions
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