DNA Sequence Context and Multiplex Hybridization Reactions:  Melting Studies of Heteromorphic Duplex DNA Complexes

2003 ◽  
Vol 125 (1) ◽  
pp. 141-150 ◽  
Author(s):  
Peter V. Riccelli ◽  
Timothy S. Hall ◽  
Petr Pancoska ◽  
Kathleen E. Mandell ◽  
Albert S. Benight
Keyword(s):  
Dna Sequence ◽  
Duplex Dna ◽  
Dna Complexes ◽  
Sequence Context

DNA sequence context modulates the impact of a cisplatin 1,2-d(GpG) intrastrand cross-link on the conformational and thermodynamic properties of duplex DNA

2000 ◽  
Vol 296 (3) ◽  
pp. 803-812 ◽  
Author(s):  
Daniel S Pilch ◽  
Shari U Dunham ◽  
Elizabeth R Jamieson ◽  
Stephen J Lippard ◽  
Kenneth J Breslauer
Keyword(s):  
Thermodynamic Properties ◽  
Dna Sequence ◽  
Duplex Dna ◽  
Cross Link ◽  
Sequence Context ◽  
The Impact

scholarly journals DNA Sequence Context as a Determinant of the Quantity and Chemistry of Guanine Oxidation Produced by Hydroxyl Radicals and One-electron Oxidants

2008 ◽  
Vol 283 (51) ◽  
pp. 35569-35578 ◽  
Author(s):  
Yelena Margolin ◽  
Vladimir Shafirovich ◽  
Nicholas E. Geacintov ◽  
Michael S. DeMott ◽  
Peter C. Dedon
Keyword(s):  
Dna Sequence ◽  
Hydroxyl Radicals ◽  
Sequence Context ◽  
Guanine Oxidation

Thermodynamic, Spectroscopic, and Equilibrium Binding Studies of DNA Sequence Context Effects in Six 22-Base Pair Deoxyoligonucleotides

Biochemistry ◽  
1999 ◽  
Vol 38 (34) ◽  
pp. 11197-11208 ◽  
Author(s):  
Peter V. Riccelli ◽  
Peter M. Vallone ◽  
Irina Kashin ◽  
Brian D. Faldasz ◽  
Michael J. Lane ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Base Pair ◽  
Context Effects ◽  
Binding Studies ◽  
Sequence Context ◽  
Equilibrium Binding

scholarly journals DNA Sequence Context Effects on the Glycosylase Activity of Human 8-Oxoguanine DNA Glycosylase

2012 ◽  
Vol 287 (44) ◽  
pp. 36702-36710 ◽  
Author(s):  
Akira Sassa ◽  
William A. Beard ◽  
Rajendra Prasad ◽  
Samuel H. Wilson
Keyword(s):  
Dna Sequence ◽  
Context Effects ◽  
Dna Glycosylase ◽  
Sequence Context

scholarly journals DNA sequence context as a marker of CpG methylation instability in normal and cancer tissues

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Giovanni Scala ◽  
Antonio Federico ◽  
Domenico Palumbo ◽  
Sergio Cocozza ◽  
Dario Greco
Keyword(s):  
Dna Sequence ◽  
Cpg Methylation ◽  
Sequence Context ◽  
Cancer Tissues

scholarly journals Repair efficiency of clustered abasic sites by APE1 in nucleosome core particles is sequence and position dependent

RSC Advances ◽  
2015 ◽  
Vol 5 (30) ◽  
pp. 23691-23698 ◽  
Author(s):  
Vandana Singh ◽  
Bhavini Kumari ◽  
Prolay Das
Keyword(s):  
Dna Sequence ◽  
Sequence Context ◽  
Nucleosome Core ◽  
Abasic Sites ◽  
Nucleosome Core Particles ◽  
Repair Efficiency ◽  
Core Particles

DNA sequence context and nucleosomal positioning guide the repair efficiency of clustered abasic sites by APE1 enzyme.

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