A study of the genetic relationships within and among wolf packs using DNA fingerprinting and mitochondrial DNA

1992 ◽  
Vol 30 (2) ◽  
Author(s):  
Niles Lehman ◽  
Peter Clarkson ◽  
L.David Mech ◽  
ThomasJ. Meier ◽  
RobertK. Wayne
Keyword(s):  
Mitochondrial Dna ◽  
Dna Fingerprinting ◽  
Genetic Relationships

Genetic Relationships of Cory's Shearwater: Parentage, Mating Assortment, and Geographic Differentiation Revealed by DNA Fingerprinting

The Auk ◽  
2000 ◽  
Vol 117 (3) ◽  
pp. 651-662 ◽  
Author(s):  
Corinne Rabouam ◽  
Vincent Bretagnolle ◽  
Yves Bigot ◽  
Georges Periquet
Keyword(s):  
Genetic Variation ◽  
Genetic Structure ◽  
Dna Fingerprinting ◽  
Genetic Relatedness ◽  
Isolation By Distance ◽  
Genetic Relationships ◽  
Cory’S Shearwater ◽  
Genetic Structure Of Populations ◽  
The Social ◽  
Calonectris Diomedea

Abstract We used DNA fingerprinting to assess genetic structure of populations in Cory's Shearwater (Calonectris diomedea). We analyzed mates and parent-offspring relationships, as well as the amount and distribution of genetic variation within and among populations, from the level of subcolony to subspecies. We found no evidence of extrapair fertilization, confirming that the genetic breeding system matches the social system that has been observed in the species. Mates were closely related, and the level of genetic relatedness within populations was within the range usually found in inbred populations. In contrast to previous studies based on allozymes and mtDNA polymorphism, DNA fingerprinting using microsatellites revealed consistent levels of genetic differentiation among populations. However, analyzing the two subspecies separately revealed that the pattern of genetic variation among populations did not support the model of isolation by distance. Natal dispersal, as well as historic and/or demographic events, probably contributed to shape the genetic structure of populations in the species.

Mitochondrial and nuclear DNA variation, genotype fingerprinting and genetic relationships in lentil (Lens culinaris Medik.)

1997 ◽  
Vol 77 (4) ◽  
pp. 515-521 ◽  
Author(s):  
Om P. Rajora ◽  
John D. Mahon
Keyword(s):  
Mitochondrial Dna ◽  
Restriction Fragment ◽  
Lens Culinaris ◽  
Nuclear Dna ◽  
Genetic Relationships ◽  
Restriction Enzymes ◽  
Dna Variation ◽  
Apocytochrome B ◽  
Nuclear Dna Variation ◽  
Mean Similarity

Mitochondrial DNA (mtDNA) and nuclear DNA (nuDNA) variations were examined in six cultivars of Lens culinaris ssp. culinaris and two (mtDNA) or one (nuDNA) accession(s) of L. culinaris ssp. orientalis. Total leaf DNA was digested with up to 15 restriction endonucleases, separated by agarose gel electrophoresis and trasferred to nylon membranes. To examine mtDNA variation, blots were probed with mtDNA coding for cytochrome c oxidase I (coxI) and ATPase 6 (atp6) of both wheat and maize as well as apocytochrome b (cob) and Orf25 (orf25) of wheat. Sixteen combinations of mtDNA probes and restriction enzymes revealed 34 fragments that discriminated between at least two lentil accessions. For nuDNA analysis, probes from cDNA and genomic DNA clones of lentil were used to probe the same blots, and identified 46 diagnostic fragments from 19 probe/enzyme combinations. Each lentil accession could be unequivocably distinguished from all others on the basis of both mitochondrial and nuclear DNA fragment patterns. The mitochondrial restriction fragment similarities ranged from 0.944 to 0.989, with a mean of 0.970 but nuclear restriction fragment similarities varied from 0.582 to 0.987, with a mean of 0.743. The apparent genetic relationships among accessions differed according to the source of DNA examined, although the commercial varieties Laird, Brewer and Redchief showed similarly high levels of mean similarity with both nuclear (0.982) and mitochondrial DNA (0.983). Key words: Lens culinaris Medik., genetic variation, mitochondrial, nuclear, DNA, lentil

scholarly journals Genetic relationships of Amaurobioides (Anyphaenidae) spiders from the southeastern coast of New Zealand

Zootaxa ◽  
2007 ◽  
Vol 1425 (1) ◽  
pp. 1-10 ◽  
Author(s):  
BRENT D. OPELL ◽  
ANDREA M. BERGER ◽  
SOPHIA M. BOUS ◽  
MICHAEL L. MANNING
Keyword(s):  
Mitochondrial Dna ◽  
Haplotype Analysis ◽  
Genetic Relationships ◽  
Genetic Distances ◽  
Restricted Gene Flow ◽  
Long Distance Dispersal ◽  
Long Distance ◽  
Morphological Species ◽  
Southern Species ◽  
Northeastern Coast

Members of the genus Amaurobioides construct silk retreats in rock crevices of the marine spray zone, a harsh and unusual habitat for spiders. This study expands the distribution records of three morphological species of Amaurobioides found on the eastern and southern coasts of New Zealand’s South Island and uses mitochondrial DNA to examine their relationships and characterize their dispersal capabilities. Both 16S and ND1 sequences distinguish A. pletus found on the northeastern coast from a complex of two southern species comprised of A. maritimus from the mainland and A. picunus from Stewart Island. Neither 16S DNA nor ND1 protein separates these southern species. However, ND1 parsimony and likelihood analyses place 10 of 11 Stewart Island specimens in a clade of low support that nests deeply within A. maritimus. A nested haplotype analysis characterizes A. maritimus and A. picunus populations as having restricted gene flow/dispersal but with some long distance dispersal. Genetic distances between A. pletus and the A. maritimus-A. picunus complex indicate a Pliocene origin, whereas distances between A. maritimus and A. picunus suggest a Pleistocene divergence.

Mitochondrial DNA variation and genetic relationships of Populus species

Genome ◽  
1993 ◽  
Vol 36 (1) ◽  
pp. 87-93 ◽  
Author(s):  
John W. Barrett ◽  
Om P. Rajora ◽  
F. C. H Yeh ◽  
Bruce P. Dancik ◽  
Curtis Strobeck
Keyword(s):  
Mitochondrial Dna ◽  
Restriction Fragment ◽  
Genetic Relationships ◽  
Mitochondrial Genomes ◽  
Nucleotide Substitutions ◽  
Dna Variation ◽  
Eastern Cottonwood ◽  
Length Polymorphisms ◽  
Populus Species ◽  
Atpase 6

We examined variation in and around the region coding for the cytochrome c oxidase I (coxI) and ATPase 6 (atp6) genes in the mitochondrial genomes of four Populus species (P. nigra, P. deltoides, P. maximowiczii, and P. tremuloides) and the natural hybrid P. × canadensis (P. deltoides × P. nigra). Total cellular DNAs of these poplars were digested with 16 restriction endonucleases and probed with maize mtDNA-specific probes (CoxI and Atp6). The only variant observed for Atp6 was interspecific, with P. maximowiczii separated from the other species as revealed by EcoRI digestions. No intraspecific mtDNA variation was observed among individuals of P. nigra, P. maximowiczii, P. × canadensis, or P. tremuloides for the CoxI probe. However, two varieties of P. deltoides were distinct because of a single site change in the KpnI digestions, demonstrating that P. deltoides var. deltoides (eastern cottonwood) and var. occidentalis (plains cottonwood) have distinct mitochondrial genomes in the region of the coxI gene. Populus × canadensis shared the same restriction fragment patterns as its suspected maternal parent P. deltoides. Nucleotide substitutions per base in and around the coxI and atp6 genes among the Populus species and the hybrid ranged from 0.0017 to 0.0077. The interspecific estimates of nucleotide substitution per base suggested that P. tremuloides was furthest removed from P. deltoides and P. × canadensis and least diverged from P. nigra. Populus maximowiczii was placed between these two clusters.Key words: mitochondrial DNA, poplars, phylogenetics, variation, restriction fragment length polymorphisms.

scholarly journals The Origin and Genetic Relationships of the Baikal Seal, Phoca sibirica, by Restriction Analysis of Mitochondrial DNA

2003 ◽  
Vol 20 (11) ◽  
pp. 1417-1422 ◽  
Author(s):  
Hiroyuki Sasaki ◽  
Ken-ichi Numachi ◽  
Mikhail A. Grachev
Keyword(s):  
Mitochondrial Dna ◽  
Restriction Analysis ◽  
Genetic Relationships

Mitochondrial DNA variation and genetic relationships in Spanish donkey breeds (Equus asinus)

2004 ◽  
Vol 121 (5) ◽  
pp. 319-330 ◽  
Author(s):  
J. Aranguren-Mendez ◽  
A. Beja-Pereira ◽  
R. Avellanet ◽  
K. Dzama ◽  
J. Jordana
Keyword(s):  
Mitochondrial Dna ◽  
Genetic Relationships ◽  
Dna Variation ◽  
Equus Asinus

Genetic variation of microsatellite and mitochondrial DNA markers in broad whitefish (Coregonus nasus) in the Colville and Sagavanirktok rivers in northern Alaska

1997 ◽  
Vol 54 (7) ◽  
pp. 1548-1556 ◽  
Author(s):  
J C Patton ◽  
B J Gallaway ◽  
R G Fechhelm ◽  
M A Cronin
Keyword(s):  
Mitochondrial Dna ◽  
Genetic Variation ◽  
Gene Flow ◽  
Microsatellite Loci ◽  
Genetic Relationships ◽  
Nuclear Genome ◽  
Pcr Amplification ◽  
Colville River ◽  
Limited Gene Flow ◽  
Northern Alaska

There has been concern that a causeway leading to oil production facilities in the Alaskan Beaufort Sea could affect the extent of emigration from, and immigration into, a population of broad whitefish (Coregonus nasus) in the Sagavanirktok River. To assess this, we analyzed the genetic relationships of the broad whitefish populations in the Sagavanirktok River, and the nearest adjacent population, in the Colville River. Three microsatellite loci from the nuclear genome, and the NADH-1 gene of mitochondrial DNA (mtDNA), were analyzed. Diploid genotypes were determined with PCR amplification of the microsatellite loci, and mtDNA genotypes were identified with PCR amplification followed by sequencing of 798 nucleotides. Several alleles were identified at each locus and both populations had high levels of genetic variation. There is significant differentiation of the Sagavanirktok River and Colville River broad whitefish stocks for the three microsatellite loci (FST = 0.031) but not mtDNA (FST < 0.001). Possible explanations for the lower level of differentiation of mtDNA than microsatellites include female-mediated gene flow between populations, skewed sex ratios, natural selection, or mutation. The results indicate that there is limited gene flow between the Colville and Sagavanirktok rivers, which represent semi-isolated spawning populations.

DNA fingerprinting analysis in the solitary bee Megachile rotundata: variability and nest mate genetic relationships

Genome ◽  
1992 ◽  
Vol 35 (4) ◽  
pp. 681-688 ◽  
Author(s):  
Alain Blanchetot
Keyword(s):  
Genetic Variability ◽  
Dna Fingerprinting ◽  
Genetic Relationships ◽  
Globin Gene ◽  
Hypervariable Region ◽  
Enzyme Polymorphism ◽  
Solitary Bee ◽  
Megachile Rotundata ◽  
Wide Range ◽  
Oligonucleotide Sequence

The most conventional approach for evaluating genetic variability in an insect population involves assessing the degree of enzyme polymorphism. Hymenoptera display a relatively low level of genetic variability compared with most insect species. DNA probes consisting of tandemly repeated sequences are powerful tools for detecting polymorphisms when employed to develop DNA fingerprinting (DNAfp) profiles in a wide range of organisms. This report describes genetic variability in the solitary bee species Megachile rotundata as assessed by DNAfp using the Ml3 sequence and a synthetic oligonucleotide sequence homologous to a hypervariable region of the α-globin gene. DNAfp comparisons among offspring were used to analyze genealogical structure in M. rotundata nests. The results indicate that polyandry, by a large number of males, is not a common phenomenon in M. rotundata bee species. In the present analysis, it is likely that the broods raised in single nests are mostly the offspring of one singly mated female. However, the data does not preclude that for certain nests two males could have been involved in the mating process.Key words: Megachile rotundata, DNA fingerprinting, M13 sequence, α-globin hypervariable sequence, intra-nest genetic relationships.

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