Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology

Gene Sequences are Locally Optimized for Global mRNA Folding

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_8 ◽

2000 ◽

pp. 131-140 ◽

Cited By ~ 2

Author(s):

William Seffens ◽

David Digby

Keyword(s):

Gene Sequences

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Global Optimization and Sampling in the Context of Tertiary Structure Prediction: A Comparison of Two Algorithms

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_4 ◽

2000 ◽

pp. 57-71

Author(s):

Volker A. Eyrich ◽

Daron M. Standley ◽

Richard A. Friesner

Keyword(s):

Global Optimization ◽

Structure Prediction ◽

Tertiary Structure ◽

Tertiary Structure Prediction

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Visualization of Chemical Databases Using the Singular Value Decomposition and Truncated-Newton Minimization

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_16 ◽

2000 ◽

pp. 267-286 ◽

Cited By ~ 3

Author(s):

Dexuan Xie ◽

Tamar Schlick

Keyword(s):

Singular Value Decomposition ◽

Singular Value ◽

Chemical Databases ◽

Truncated Newton ◽

Value Decomposition ◽

Newton Minimization

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Improved Evolutionary Hybrids for Flexible Ligand Docking in AutoDock

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_12 ◽

2000 ◽

pp. 209-229 ◽

Cited By ~ 12

Author(s):

William E. Hart ◽

Chris Rosin ◽

Richard K. Belew ◽

Garrett M. Morris

Keyword(s):

Ligand Docking ◽

Flexible Ligand ◽

Flexible Ligand Docking

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An approach to detect the dominant folds of proteinlike heteropolymers from the statistics of a homopolymeric chain

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_7 ◽

2000 ◽

pp. 107-129

Author(s):

Erik D. Nelson ◽

Peter G. Wolynes ◽

Jose’ N. Onuchic

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Energy Landscape Projections of Molecular Potential Functions

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_3 ◽

2000 ◽

pp. 47-55 ◽

Cited By ~ 1

Author(s):

Andrew T. Phillips ◽

J. Ben Rosen ◽

Ken A. Dill

Keyword(s):

Energy Landscape ◽

Potential Functions ◽

Molecular Potential

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A Coupled Scanning and Optimization Scheme for Analyzing Molecular Interactions

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_11 ◽

2000 ◽

pp. 191-207 ◽

Cited By ~ 5

Author(s):

Julie C. Mitchell ◽

Andrew T. Phillips ◽

J. Ben Rosen ◽

Lynn F. Ten Eyck

Keyword(s):

Molecular Interactions ◽

Optimization Scheme

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Predicting Protein Tertiary Structure using a Global Optimization Algorithm with Smoothing

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_1 ◽

2000 ◽

pp. 1-18 ◽

Cited By ~ 2

Author(s):

Aqil Azmi ◽

Richard H. Byrd ◽

Elizabeth Eskow ◽

Robert B. Schnabel ◽

Silvia Crivelli ◽

...

Keyword(s):

Global Optimization ◽

Optimization Algorithm ◽

Tertiary Structure ◽

Global Optimization Algorithm ◽

Protein Tertiary Structure

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Structure Calculations of Symmetric Dimers using Molecular Dynamics/Simulated Annealing and NMR Restraints: The Case of the RIIα Subunit of Protein Kinase A

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_9 ◽

2000 ◽

pp. 141-156 ◽

Cited By ~ 1

Author(s):

Dimitrios Morikis ◽

Marceen Glavic Newlon ◽

Patricia A. Jennings

Keyword(s):

Molecular Dynamics ◽

Simulated Annealing ◽

Protein Kinase ◽

Protein Kinase A ◽

Nmr Restraints ◽

Structure Calculations ◽

Kinase A

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Exploring potential solvation sites of proteins by multistart local minimization

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology ◽

10.1007/978-1-4757-3218-4_14 ◽

2000 ◽

pp. 243-261 ◽

Cited By ~ 1

Author(s):

Sheldon Dennis ◽

Carlos J. Camacho ◽

Sandor Vajda

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Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology
Latest Publications

TOTAL DOCUMENTS

H-INDEX

Published By Springer US

Gene Sequences are Locally Optimized for Global mRNA Folding

Global Optimization and Sampling in the Context of Tertiary Structure Prediction: A Comparison of Two Algorithms

Visualization of Chemical Databases Using the Singular Value Decomposition and Truncated-Newton Minimization

Improved Evolutionary Hybrids for Flexible Ligand Docking in AutoDock

An approach to detect the dominant folds of proteinlike heteropolymers from the statistics of a homopolymeric chain

Energy Landscape Projections of Molecular Potential Functions

A Coupled Scanning and Optimization Scheme for Analyzing Molecular Interactions

Predicting Protein Tertiary Structure using a Global Optimization Algorithm with Smoothing

Structure Calculations of Symmetric Dimers using Molecular Dynamics/Simulated Annealing and NMR Restraints: The Case of the RIIα Subunit of Protein Kinase A

Exploring potential solvation sites of proteins by multistart local minimization

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Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular BiologyLatest Publications

TOTAL DOCUMENTS

H-INDEX

Published By Springer US

Gene Sequences are Locally Optimized for Global mRNA Folding

Global Optimization and Sampling in the Context of Tertiary Structure Prediction: A Comparison of Two Algorithms

Visualization of Chemical Databases Using the Singular Value Decomposition and Truncated-Newton Minimization

Improved Evolutionary Hybrids for Flexible Ligand Docking in AutoDock

An approach to detect the dominant folds of proteinlike heteropolymers from the statistics of a homopolymeric chain

Energy Landscape Projections of Molecular Potential Functions

A Coupled Scanning and Optimization Scheme for Analyzing Molecular Interactions

Predicting Protein Tertiary Structure using a Global Optimization Algorithm with Smoothing

Structure Calculations of Symmetric Dimers using Molecular Dynamics/Simulated Annealing and NMR Restraints: The Case of the RIIα Subunit of Protein Kinase A

Exploring potential solvation sites of proteins by multistart local minimization

Nonconvex Optimization and Its Applications - Optimization in Computational Chemistry and Molecular Biology
Latest Publications