Pyrochlore-Supergroup Minerals Nomenclature: An Update

The general formula of the pyrochlore-supergroup minerals is A2B2X6Y. The mineral names are composed of two prefixes and one root name (identical to the name of the group). The first prefix refers to the dominant anion (or cation or H2O or vacancy) of the dominant valence at the Y-site. The second prefix refers to the dominant cation of the dominant valence [or H2O or vacancy] at the A-site. Thirty-one pyrochlore-supergroup mineral species are currently distributed into four groups [pyrochlore (B = Nb, X = O), microlite (B = Ta, X = O), roméite (B = Sb5+, X = O), and elsmoreite (B = W, X = O)] and two unassigned members [hydrokenoralstonite (B = Al, X = F) and fluornatrocoulsellite (B = Mg, X = F)]. However, when the new nomenclature system of this supergroup was introduced (2010) only seven mineral species, namely, oxycalciopyrochlore, hydropyrochlore, hydroxykenomicrolite, oxystannomicrolite, oxystibiomicrolite, hydroxycalcioroméite, and hydrokenoelsmoreite, were valid. The seven species belong to the cubic crystal system and space group Fd3¯m and O is predominant in the X structural site. The 24 new mineral species described between 2010 and 2021 are cesiokenopyrochlore, fluorcalciopyrochlore, fluornatropyrochlore, hydrokenopyrochlore, hydroxycalciopyrochlore, hydroxynatropyrochlore, hydroxykenopyrochlore, hydroxymanganopyrochlore, hydroxyplumbopyrochlore, fluorcalciomicrolite, fluornatromicrolite, hydrokenomicrolite, hydroxycalciomicrolite, kenoplumbomicrolite, oxynatromicrolite, oxycalciomicrolite, oxybismutomicrolite, fluorcalcioroméite, hydroxyferroroméite, oxycalcioroméite, oxyplumboroméite, fluornatrocoulsellite, hydrokenoralstonite, and hydroxykenoelsmoreite. Among the new species, hydroxycalciomicrolite belongs to a different space group of the cubic system, i.e., P4232. There are also some mineral species that crystallize in the trigonal system. Hydrokenoelsmoreite occurs as 3C (Fd3¯m) and 6R (R3¯) polytypes. Hydrokenomicrolite occurs as 3C (Fd3¯m) and 3R (R3¯m) polytypes, of which the latter corresponds to the discredited “parabariomicrolite.” Fluornatrocoulsellite crystallizes as 3R (R3¯m) polytype. Surely there are several new pyrochlore-supergroup minerals to be described.

Structural basis for the hydrolytic dehalogenation of the fungicide chlorothalonil

Cleavage of aromatic carbon–chlorine bonds is critical for the degradation of toxic industrial compounds. Here, we solved the X-ray crystal structure of chlorothalonil dehalogenase (Chd) from Pseudomonas sp. CTN-3, with 15 of its N-terminal residues truncated (ChdT), using single-wavelength anomalous dispersion refined to 1.96 Å resolution. Chd has low sequence identity (<15%) compared with all other proteins whose structures are currently available, and to the best of our knowledge, we present the first structure of a Zn(II)-dependent aromatic dehalogenase that does not require a coenzyme. ChdT forms a “head-to-tail” homodimer, formed between two α-helices from each monomer, with three Zn(II)-binding sites, two of which occupy the active sites, whereas the third anchors a structural site at the homodimer interface. The catalytic Zn(II) ions are solvent-accessible via a large hydrophobic (8.5 × 17.8 Å) opening to bulk solvent and two hydrophilic branched channels. Each active-site Zn(II) ion resides in a distorted trigonal bipyramid geometry with His117, His257, Asp116, Asn216, and a water/hydroxide as ligands. A conserved His residue, His114, is hydrogen-bonded to the Zn(II)-bound water/hydroxide and likely functions as the general acid-base. We examined substrate binding by docking chlorothalonil (2,4,5,6-tetrachloroisophtalonitrile, TPN) into the hydrophobic channel and observed that the most energetically favorable pose includes a TPN orientation that coordinates to the active-site Zn(II) ions via a CN and that maximizes a π–π interaction with Trp227. On the basis of these results, along with previously reported kinetics data, we propose a refined catalytic mechanism for Chd-mediated TPN dehalogenation.

Portland clinker production with carbonatite waste and tire-derived fuel: crystallochemistry of minor and trace elements

This paper presents results on the composition of Portland clinkers produced with non-conventional raw-materials and fuels, focusing on the distribution of selected trace elements. Clinkers produced with three different fuel compositions were sampled in an industrial plant, where all other parameters were kept unchanged. The fuels have chemical fingerprints, which are sulfur for petroleum coke and zinc for TDF (tire-derived fuel). Presence of carbonatite in the raw materials is indicated by high amounts of strontium and phosphorous. Electron microprobe data was used to determine occupation of structural site of both C3S and C2S, and the distribution of trace elements among clinker phases. Phosphorous occurs in similar proportions in C3S and C2S; while considering its modal abundance, C3S is its main reservoir in the clinker. Sulfur is preferentially partitioned toward C2S compared to C3S. Strontium substitutes for Ca2+ mainly in C2S and in non-silicatic phases, compared to C3S.

Element Partitioning in a Pyrochlore-Based Ceramic Nuclear Waste form

ABSTRACTPyrochlore-rich ceramics containing additional zirconolite, brannerite and rutile have been developed for immobilizing excess weapons plutonium. This study reports data for a ceramic containing small amounts of Al and Mo in addition to the major oxide components of Ti, U, Ca, Hf, Gd and Ce. Hafnium and Gd are added as neutron absorbers, Al and Mo represent impurities. Quantitative electron microprobe data demonstrate that UO2 is strongly partitioned into brannerite (45 wt%), which is present as euhedral crystals with inclusions of unreacted UO2. Pyrochlore forms the groundmass and has an average UO2 content of 28 wt%. Zirconolite contains only 15 wt% UO2, but is significantly more effective in accommodating Hf and Gd than both brannerite and pyrochlore. Zirconolite incorporates U together with Hf and Ce in one structural site, whereas brannerite and pyrochlore accommodate U with Gd in a site that is distinct from that occupied by Hf. Incorporation of Gd into zirconolite takes place via a coupled substitution involving Al, thus explaining the high Al2O3 contents (3 wt%). Molybdenum was not detected in the major oxides, and it might be present in the accessory rutile. Although the studied waste form was designed to incorporate Pu, the present dataset is also valuable because immobilization of highly fissile U (e.g., U-233) might need to be considered in the future.