transcriptome change
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2021 ◽  
Vol 22 (5) ◽  
pp. 2560
Author(s):  
Mariia Lunova ◽  
Jan Kubovciak ◽  
Barbora Smolková ◽  
Mariia Uzhytchak ◽  
Kyra Michalova ◽  
...  

Lambda interferons mediate antiviral immunity by inducing interferon-stimulated genes (ISGs) in epithelial tissues. A common variant rs368234815TT/∆G creating functional gene from an IFNL4 pseudogene is associated with the expression of major ISGs in the liver but impaired clearance of hepatitis C. To explain this, we compared Halo-tagged and non-tagged IFNL3 and IFNL4 signaling in liver-derived cell lines. Transfection with non-tagged IFNL3, non-tagged IFNL4 and Halo-tagged IFNL4 led to a similar degree of JAK-STAT activation and ISG induction; however, the response to transfection with Halo-tagged IFNL3 was lower and delayed. Transfection with non-tagged IFNL3 or IFNL4 induced no transcriptome change in the cells lacking either IL10R2 or IFNLR1 receptor subunits. Cytosolic overexpression of signal peptide-lacking IFNL3 or IFNL4 in wild type cells did not interfere with JAK-STAT signaling triggered by interferons in the medium. Finally, expression profile changes induced by transfection with non-tagged IFNL3 and IFNL4 were highly similar. These data do not support the hypothesis about IFNL4-specific non-canonical signaling and point out that functional studies conducted with tagged interferons should be interpreted with caution.


2020 ◽  
Vol 398 ◽  
pp. 115031
Author(s):  
Artem P. Gureev ◽  
Ekaterina A. Shaforostova ◽  
Inna Yu. Vitkalova ◽  
Irina S. Sadovnikova ◽  
Yulia I. Kalinina ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Xinyu Feng ◽  
Lingqian Zhu ◽  
Zhiqiang Qin ◽  
Xiaojin Mo ◽  
Yuwan Hao ◽  
...  

PLoS ONE ◽  
2015 ◽  
Vol 10 (12) ◽  
pp. e0144822 ◽  
Author(s):  
Norichika Ogata ◽  
Toshinori Kozaki ◽  
Takeshi Yokoyama ◽  
Tamako Hata ◽  
Kikuo Iwabuchi

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