degree of extension
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2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Maria Maddalena Tumedei ◽  
Sara Ravaioli ◽  
Federica Matteucci ◽  
Monica Celli ◽  
Ugo De Giorgi ◽  
...  

AbstractBladder cancer (BCa) patients are diagnosed by cytology and cystoscopy. However, these diagnostic tests bear some limitations. We sought for reliable biomarkers to better determine BCa extension. Prostate-specific membrane antigen (PSMA) appears to fulfill this requirement in prostate cancer but its role in BCa has not been established yet. We then analyzed 87 bladder tissue samples from 74 patients assessing PSMA expression by immunohistochemistry. The median PSMA expression, exclusively found in tumor neovasculature, in terms of H-score significantly differed between non-tumor samples and tumor samples (p = 0.00288) showing a higher neovasculature-related PSMA expression. No differences were observed in relation to tumor type, grade and stage. BCa neovasculature-related PSMA overexpression may be useful in defining the degree of extension of the neoplasm. In addition, testing PSMA expression by immunohistochemistry may hold theranostic implications both considering anti-angiogenesis agents and radio-labelled PSMA ligands for intracavitary radionuclide therapy. In our opinion, BCa neovasculature-related PSMA overexpression may be considered an apt target for anti-angiogenesis and radionuclide treatment in BCa, once the evaluation of tumor-retention time for the appropriateness of long half-life therapeutic PSMA ligands as radionuclide treatment will be performed.


2017 ◽  
Vol 32 (9) ◽  
pp. 2717-2724 ◽  
Author(s):  
Seong Hwan Kim ◽  
Du-Hyun Ro ◽  
Yool Cho ◽  
Young-Min Lee ◽  
Sahnghoon Lee ◽  
...  

Author(s):  
Niklas Bosaeus ◽  
Anna Reymer ◽  
Tamás Beke-Somfai ◽  
Tom Brown ◽  
Masayuki Takahashi ◽  
...  

AbstractWe have discovered a well-defined extended conformation of double-stranded DNA, which we call Σ-DNA, using laser-tweezers force-spectroscopy experiments. At a transition force corresponding to free energy change ΔG = 1·57 ± 0·12 kcal (mol base pair)−1 60 or 122 base-pair long synthetic GC-rich sequences, when pulled by the 3′−3′ strands, undergo a sharp transition to the 1·52 ± 0·04 times longer Σ-DNA. Intriguingly, the same degree of extension is also found in DNA complexes with recombinase proteins, such as bacterial RecA and eukaryotic Rad51. Despite vital importance to all biological organisms for survival, genome maintenance and evolution, the recombination reaction is not yet understood at atomic level. We here propose that the structural distortion represented by Σ-DNA, which is thus physically inherent to the nucleic acid, is related to how recombination proteins mediate recognition of sequence homology and execute strand exchange. Our hypothesis is that a homogeneously stretched DNA undergoes a ‘disproportionation’ into an inhomogeneous Σ-form consisting of triplets of locally B-like perpendicularly stacked bases. This structure may ensure improved fidelity of base-pair recognition and promote rejection in case of mismatch during homologous recombination reaction. Because a triplet is the length of a gene codon, we speculate that the structural physics of nucleic acids may have biased the evolution of recombinase proteins to exploit triplet base stacks and also the genetic code.


2009 ◽  
Vol 29 (1) ◽  
pp. 73-85 ◽  
Author(s):  
M. O. Gallyamov ◽  
B. Tartsch ◽  
I. I. Potemkin ◽  
H. G. Börner ◽  
K. Matyjaszewski ◽  
...  

2008 ◽  
Vol 41 (6) ◽  
pp. 1019-1023
Author(s):  
T. Ida

The statistical properties of X-ray intensities measured with counting systems have been experimentally investigated. A formula of statistical variance for the intermediately extended dead-time model is proposed and compared with the experimentally evaluated variance obtained from repeated measurements based on Chipman's foil method applied to X-ray detection systems of laboratory and synchrotron powder diffractometers. It has been found that the variance of the observed intensities is smaller than the average of count, as has been suggested by conventional theoretical models for counting loss. It is shown that the statistical errors can be predicted by applying an intermediately extended dead-time model including dead-time τ and degree of extension ρ as fixed parameters.


2007 ◽  
Vol 49 (6) ◽  
pp. 663-670 ◽  
Author(s):  
E. M. Antipov ◽  
Yu. A. Lebedev ◽  
A. V. Rebrov ◽  
S. A. Kuptsov ◽  
P. M. Pakhomov ◽  
...  

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