Molecular Packing Interaction in DNA Crystals

DNA crystallography provides essential structural information to understand the biochemical and biological functions of oligonucleotides. Therefore, it is necessary to understand the factors affecting crystallization of DNA to develop a strategy for production of diffraction-quality DNA crystals. We analyzed key factors affecting intermolecular interactions in 509 DNA crystals from the Nucleic Acid Database and Protein Databank. Packing interactions in DNA crystals were classified into four categories based on the intermolecular hydrogen bonds in base or backbone, and their correlations with other factors were analyzed. From this analysis, we confirmed that hydrogen bonding between terminal end and mid-region is most common in crystal packing and in high-resolution crystal structures. Interestingly, P212121 is highly preferred in DNA crystals in general, but the P61 space group is relatively abundant in A-DNA crystals. Accordingly, P212121 contains more terminal end-mid-region interactions than other space groups, confirming the significance of this interaction. While metals play a role in the production of a good crystal in B-DNA conformation, their effect is not significant in other conformations. From these analyses, we found that packing interaction and other factors have a strong influence on the quality of DNA crystals and provide key information to predict crystal growth of candidate oligonucleotides.

Preparation and X-Ray Crystal Structure of Layered Ca(II) Complex Material

A novel Ca(II) complex material was prepared by reaction of O-nitrobenzaldehyde- 3-amino-benzenesulfonic acid with Ca(ClO4)2, and characterized by X-ray single crystal diffraction method. The analytical results shows that the Ca(II) complex was crystallized in the monoclinic system, space group P2(1)/c, with a = 17.515(10) Å, b = 7.019(4) Å, c = 13.853(8) Å, β = 104.855(10) º, V = 1646.3(17) Å3, Z = 2. The geometry of Ca(II) is a slightly distorted dodecahedrall geometry. In the crystal packing, the complex molecules form layered structure by the π-π packing interaction, and the molecules form a one-dimensional chain structure by hydrogen bonds.