Minimizing Potential Allee Effects in Psittacine Reintroductions: An Example from Puerto Rico

The family Psittacidae is comprised of over 400 species, an ever-increasing number of which are considered threatened with extinction. In recent decades, conservation strategies for these species have increasingly employed reintroduction as a technique for reestablishing populations in previously extirpated areas. Because most Psittacines are highly social and flocking species, reintroduction efforts may face the numerical and methodological challenge of overcoming initial Allee effects during the critical establishment phase of the reintroduction. These Allee effects can result from failures to achieve adequate site fidelity, survival and flock cohesion of released individuals, thus jeopardizing the success of the reintroduction. Over the past 20 years, efforts to reestablish and augment populations of the critically endangered Puerto Rican parrot (Amazona vittata) have periodically faced the challenge of apparent Allee effects. These challenges have been mitigated via a novel release strategy designed to promote site fidelity, flock cohesion and rapid reproduction of released parrots. Efforts to date have resulted in not only the reestablishment of an additional wild population in Puerto Rico, but also the reestablishment of the species in the El Yunque National Forest following its extirpation there by the Category 5 hurricane Maria in 2017. This promising release strategy has potential applicability in reintroductions of other psittacines and highly social species in general.

Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation

Islands have been used as model systems for studies of speciation and extinction since Darwin published his observations about finches found on the Galapagos. Amazon parrots inhabiting the Greater Antillean Islands represent a fascinating model of species diversification. Unfortunately, many of these birds are threatened as a result of human activity and some, like the Puerto Rican parrot, are now critically endangered. In this study we used a combination of de novo and reference-assisted assembly methods, integrating it with information obtained from related genomes to perform genome reconstruction of three amazon species. First, we used whole genome sequencing data to generate a new de novo genome assembly for the Puerto Rican parrot (Amazona vittata). We then improved the obtained assembly using transcriptome data from Amazona ventralis and used the resulting sequences as a reference to assemble the genomes Hispaniolan (A. ventralis) and Cuban (Amazona leucocephala) parrots. Finally, we, annotated genes and repetitive elements, estimated genome sizes and current levels of heterozygosity, built models of demographic history and provided interpretation of our findings in the context of parrot evolution in the Caribbean.