specific packing
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2016 ◽  
Vol 428 (2) ◽  
pp. 509-521 ◽  
Author(s):  
Shilpa Yadahalli ◽  
Shachi Gosavi

PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e1265 ◽  
Author(s):  
Sergei E. Permyakov ◽  
Eugene A. Permyakov ◽  
Vladimir N. Uversky

We show here that chicken gizzard caldesmon (CaD) and its C-terminal domain (residues 636–771, CaD136) are intrinsically disordered proteins. The computational and experimental analyses of the wild type CaD136and series of its single tryptophan mutants (W674A, W707A, and W737A) and a double tryptophan mutant (W674A/W707A) suggested that although the interaction of CaD136with calmodulin (CaM) can be driven by the non-specific electrostatic attraction between these oppositely charged molecules, the specificity of CaD136-CaM binding is likely to be determined by the specific packing of important CaD136tryptophan residues at the CaD136-CaM interface. It is suggested that this interaction can be described as the “buttons on a charged string” model, where the electrostatic attraction between the intrinsically disordered CaD136and the CaM is solidified in a “snapping buttons” manner by specific packing of the CaD136“pliable buttons” (which are the short segments of fluctuating local structure condensed around the tryptophan residues) at the CaD136-CaM interface. Our data also show that all three “buttons” are important for binding, since mutation of any of the tryptophans affects CaD136-CaM binding and since CaD136remains CaM-buttoned even when two of the three tryptophans are mutated to alanines.


2015 ◽  
Author(s):  
Sergei E Permyakov ◽  
Eugene A Permyakov ◽  
Vladimir N Uversky

We show here that chicken gizzard caldesmon (CaD) and its C-terminal domain (residues 636-771, CaD136) are intrinsically disordered proteins. The computational and experimental analyses of the wild type CaD136 and series of its single tryptophan mutants (W674A, W707A, and W737A) and a double tryptophan mutant (W674A/W707A) suggested that although the interaction of CaD136 with calmodulin (CaM) can be driven by the non-specific electrostatic attraction between these oppositely charged molecules, the specificity of CaD136-CaM binding is likely to be determined by the specific packing of important CaD136 tryptophan residues at the CaD136-CaM interface. It is suggested that this interaction can be described as the “buttons on a charged string” model, where the electrostatic attraction between the intrinsically disordered CaD136 and the CaM is solidified in a “snapping buttons” manner by specific packing of the CaD136 “pliable buttons” (which are the short segments of fluctuating local structure condensed around the tryptophan residues) at the CaD136-CaM interface. Our data also show that all three “buttons” are important for binding, since mutation of any of the tryptophans affects CaD136-CaM binding and since CaD136 remains CaM-buttoned even when two of the three tryptophans are mutated to alanines.


2015 ◽  
Author(s):  
Sergei E Permyakov ◽  
Eugene A Permyakov ◽  
Vladimir N Uversky

We show here that chicken gizzard caldesmon (CaD) and its C-terminal domain (residues 636-771, CaD136) are intrinsically disordered proteins. The computational and experimental analyses of the wild type CaD136 and series of its single tryptophan mutants (W674A, W707A, and W737A) and a double tryptophan mutant (W674A/W707A) suggested that although the interaction of CaD136 with calmodulin (CaM) can be driven by the non-specific electrostatic attraction between these oppositely charged molecules, the specificity of CaD136-CaM binding is likely to be determined by the specific packing of important CaD136 tryptophan residues at the CaD136-CaM interface. It is suggested that this interaction can be described as the “buttons on a charged string” model, where the electrostatic attraction between the intrinsically disordered CaD136 and the CaM is solidified in a “snapping buttons” manner by specific packing of the CaD136 “pliable buttons” (which are the short segments of fluctuating local structure condensed around the tryptophan residues) at the CaD136-CaM interface. Our data also show that all three “buttons” are important for binding, since mutation of any of the tryptophans affects CaD136-CaM binding and since CaD136 remains CaM-buttoned even when two of the three tryptophans are mutated to alanines.


2014 ◽  
Vol 5 (6) ◽  
pp. 480-483 ◽  
Author(s):  
Lizong Deng ◽  
Xiaoxi Dong ◽  
Aiping Wu ◽  
Tingrui Song ◽  
Taijiao Jiang

2011 ◽  
Vol 12 (1) ◽  
pp. 195 ◽  
Author(s):  
Sankar Basu ◽  
Dhananjay Bhattacharyya ◽  
Rahul Banerjee
Keyword(s):  

2010 ◽  
Vol 14 (5) ◽  
pp. 1137-1143 ◽  
Author(s):  
D Bandyopadhyay ◽  
Jun Huan ◽  
Jinze Liu ◽  
J Prins ◽  
J Snoeyink ◽  
...  

Author(s):  
Taneem Ahmed ◽  
Paul D. Kundarewich ◽  
Jason H. Anderson ◽  
Brad L. Taylor ◽  
Rajat Aggarwal
Keyword(s):  

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