peptide plane
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2019 ◽  
Vol 150 (22) ◽  
pp. 225103
Author(s):  
Jiaojiao Liu ◽  
Jin Dai ◽  
Jianfeng He ◽  
Xubiao Peng ◽  
Antti J. Niemi

PLoS ONE ◽  
2019 ◽  
Vol 14 (4) ◽  
pp. e0215141
Author(s):  
Yanzhen Hou ◽  
Jiaojiao Liu ◽  
Jianfeng He ◽  
Xubiao Peng ◽  
Antti J. Niemi

2018 ◽  
Vol 86 (6) ◽  
pp. 684-692 ◽  
Author(s):  
Jia Wang ◽  
Jingfei Chen ◽  
Jingwen Li ◽  
Liaoyuan An ◽  
Yefei Wang ◽  
...  

2015 ◽  
Vol 71 (a1) ◽  
pp. s270-s270 ◽  
Author(s):  
Wouter G. Touw ◽  
Robbie P. Joosten ◽  
Gert Vriend

2015 ◽  
Vol 71 (8) ◽  
pp. 1604-1614 ◽  
Author(s):  
Wouter G. Touw ◽  
Robbie P. Joosten ◽  
Gert Vriend

A coordinate-based method is presented to detect peptide bonds that need correction either by a peptide-plane flip or by atrans–cisinversion of the peptide bond. When applied to the whole Protein Data Bank, the method predicts 4617trans–cisflips and many thousands of hitherto unknown peptide-plane flips. A few examples are highlighted for which a correction of the peptide-plane geometry leads to a correction of the understanding of the structure–function relation. All data, including 1088 manually validated cases, are freely available and the method is available from a web server, a web-service interface and throughWHAT_CHECK.


2015 ◽  
Vol 55 (1) ◽  
pp. 104-113 ◽  
Author(s):  
Chunyan He ◽  
Jingfei Chen ◽  
Liaoyuan An ◽  
Yefei Wang ◽  
Zhiyu Shu ◽  
...  

2008 ◽  
Vol 10 (11) ◽  
pp. 2219-2227 ◽  
Author(s):  
Steven Hayward
Keyword(s):  

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