Nestedness structure of bird assemblages in a fragmented forest in Central Argentina: the role of selective extinction and colonization processes

Nestedness analysis constitutes an important tool to understand the processes that shape wildlife communities. It also allows a quick first evaluation of species extinction proneness in fragmented landscapes. Here, we tested whether avian assemblages in the fragmented Espinal forest exhibited nested subset patterns. Furthermore, we examined whether selective extinction or selective colonization are driving nested subset patterns. We studied avian assemblages in 13 forest fragments in central Argentina during breeding and non–breeding seasons. We completed partial Spearman rank correlations to explore the relationship between nestedness rank order and habitat patch variables and species life history traits related to species extinction proneness and colonization rate. Bird species showed strong nestedness patterns, both for the total incidence matrix and for forest fragments and species separately. Nestedness patterns were similar during the breeding and non–breeding seasons. The nested rank order of forest fragments correlated with area and distance to nearest fragment, both of which are patch characteristics known to increase the probabilities of species extinction. The nested rank order of species was correlated with the minimum area of species requirement, trophic guild, and range size, traits that are linked to extinction risk. Selective extinction processes rather than selective colonization appear to be driving nestedness patterns of bird assemblages in fragmented Espinal forest. The most effective way to preserve forest bird species in the Espinal forest seems to be by protecting the larger fragments of this relictual forest.

Toward an understanding of cosmopolitanism in deep time: a case study of ammonoids from the middle Permian to the Middle Triassic

Cosmopolitanism occurred recurrently during the geologic past, especially after mass extinctions, but the underlying mechanisms remain poorly known. Three theoretical models, not mutually exclusive, can lead to cosmopolitanism: (1) selective extinction in endemic taxa, (2) endemic taxa becoming cosmopolitan after the extinction and (3) an increase in the number of newly originated cosmopolitan taxa after extinction. We analyzed an updated occurrence dataset including 831 middle Permian to Middle Triassic ammonoid genera and used two network methods to distinguish major episodes of ammonoid cosmopolitanism during this time interval. Then, we tested the three proposed models in these case studies. Our results confirm that at least two remarkable cosmopolitanism events occurred after the Permian–Triassic and late Smithian (Early Triassic) extinctions, respectively. Partitioned analyses of survivors and newcomers revealed that the immediate cosmopolitanism event (Griesbachian) after the Permian–Triassic event can be attributed to endemic genera becoming cosmopolitan (model 2) and an increase in the number of newly originated cosmopolitan genera after the extinction (model 3). Late Smithian cosmopolitanism is caused by selective extinction in endemic taxa (model 1) and an increase in the number of newly originated cosmopolitan genera (model 3). We found that the survivors of the Permian–Triassic mass extinction did not show a wider geographic range, suggesting that this mass extinction is nonselective among the biogeographic ranges, while late Smithian survivors exhibit a wide geographic range, indicating selective survivorship among cosmopolitan genera. These successive cosmopolitanism events during severe extinctions are associated with marked environmental upheavals such as rapid climate changes and oceanic anoxic events, suggesting that environmental fluctuations play a significant role in cosmopolitanism.

Anomalous fluctuations and selective extinction in primordial replicators: a ‘struggle for life’ at the origin of biological homochirality

The prevalent presence of a single chiral variant of molecules in live organisms is one of the most distinctive signs of life as a global phenomenon. One of the greatest ambitions of biochemistry and astrobiology is to provide an explanation of this predominance. Several mechanisms were proposed in the past, from the propagation of chirality from a homo-chiral substrate to the amplification of effects associated with electro-weak interactions. Here, a different scenario is proposed: anomalous fluctuations associated with a self-replication scenario can lead to the selective extinction of primordial organisms using one of two enantiomers as an enzyme. These fluctuations arise spontaneously under very general conditions. The idea is based on three key points: (a) the simulation of early biological processes as a ‘board game’; (b) the presence of large fluctuations during an autocatalytic process; (c) the presence of a limited source of chemical energy, inducing a form of competition in a primordial replicator population. In order to demonstrate this mechanism, a computational model is developed, describing the ‘struggle for life’ of two different kinds of primordial replicators on a ‘chessboard’ with periodic boundary conditions; each replicator employs enzymes of different chirality on a non-chiral substrate, thereby with no selective advantage. The replication occurs randomly and with a fixed probability, providing that a sufficient amount of chemical energy is locally available. For the first time, our model includes the local balance of chemical energy in a molecular form on the substrate. The correlation between the chemical energy and the local populations is shown. Results clearly show that strong fluctuations in the number of individuals of each species and subsequent selective extinction events of one of the two species are observed. These studies may contribute to shed light on the most mysterious phase transition that occurred during the biochemical evolution of our planet.

Selective extinction against redundant species buffers functional diversity

The extinction of species can destabilize ecological processes. A way to assess the ecological consequences of species loss is by examining changes in functional diversity. The preservation of functional diversity depends on the range of ecological roles performed by species, or functional richness, and the number of species per role, or functional redundancy. However, current knowledge is based on short timescales and an understanding of how functional diversity responds to long-term biodiversity dynamics has been limited by the availability of deep-time, trait-based data. Here, we compile an exceptional trait dataset of fossil molluscs from a 23-million-year interval in the Caribbean Sea (34 011 records, 4422 species) and develop a novel Bayesian model of multi-trait-dependent diversification to reconstruct mollusc (i) diversity dynamics, (ii) changes in functional diversity, and (iii) extinction selectivity over the last 23 Myr. Our results identify high diversification between 23–5 Mya, leading to increases in both functional richness and redundancy. Conversely, over the last three million years, a period of high extinction rates resulted in the loss of 49% of species but only 3% of functional richness. Extinction rates were significantly higher in small, functionally redundant species suggesting that competition mediated the response of species to environmental change. Taken together, our results identify long-term diversification and selective extinction against redundant species that allowed functional diversity to grow over time, ultimately buffering the ecological functions of biological communities against extinction.

Flat latitudinal diversity gradient caused by the Permian–Triassic mass extinction

The latitudinal diversity gradient (LDG) is recognized as one of the most pervasive, global patterns of present-day biodiversity. However, the controlling mechanisms have proved difficult to identify because many potential drivers covary in space. The geological record presents a unique opportunity for understanding the mechanisms which drive the LDG by providing a direct window to deep-time biogeographic dynamics. Here we used a comprehensive database containing 52,318 occurrences of marine fossils to show that the shape of the LDG changed greatly during the Permian–Triassic mass extinction from showing a significant tropical peak to a flattened LDG. The flat LDG lasted for the entire Early Triassic (∼5 My) before reverting to a modern-like shape in the Middle Triassic. The environmental extremes that prevailed globally, especially the dramatic warming, likely induced selective extinction in low latitudes and accumulation of diversity in high latitudes through origination and poleward migration, which combined together account for the flat LDG of the Early Triassic.

Thermophysiologies of Jurassic marine crocodylomorphs inferred from the oxygen isotope composition of their tooth apatite

Teleosauridae and Metriorhynchidae were thalattosuchian crocodylomorph clades that secondarily adapted to marine life and coexisted during the Middle to Late Jurassic. While teleosaurid diversity collapsed at the end of the Jurassic, most likely as a result of a global cooling of the oceans and associated marine regressions, metriorhynchid diversity was largely unaffected, although the fossil record of Thalattosuchia is poor in the Cretaceous. In order to investigate the possible differences in thermophysiologies between these two thalattosuchian lineages, we analysed stable oxygen isotope compositions (expressed as δ 18 O values) of tooth apatite from metriorhynchid and teleosaurid specimens. We then compared them with the δ 18 O values of coexisting endo-homeothermic ichthyosaurs and plesiosaurs, as well as ecto-poikilothermic chondrichthyans and osteichthyans. The distribution of δ 18 O values suggests that both teleosaurids and metriorhynchids had body temperatures intermediate between those of typical ecto-poikilothermic vertebrates and warm-blooded ichthyosaurs and plesiosaurs, metriorhynchids being slightly warmer than teleosaurids. We propose that metriorhynchids were able to raise their body temperature above that of the ambient environment by metabolic heat production, as endotherms do, but could not maintain a constant body temperature compared with fully homeothermic ichthyosaurs and plesiosaurs. Teleosaurids, on the other hand, may have raised their body temperature by mouth-gape basking, as modern crocodylians do, and benefited from the thermal inertia of their large body mass to maintain their body temperature above the ambient one. Endothermy in metriorhynchids might have been a by-product of their ecological adaptations to active pelagic hunting, and it probably allowed them to survive the global cooling of the Late Jurassic, thus explaining the selective extinction affecting Thalattosuchia at the Jurassic–Cretaceous boundary. This article is part of the theme issue ‘Vertebrate palaeophysiology'.