Growth of Lahontan Cutthroat Trout from multiple sources re-introduced into Sagehen Creek, CA

Lahontan Cutthroat Trout Oncorhynchus clarkii henshawi have experienced massive declines in their native range and are now a threatened species under the US Endangered Species Act. A key management goal for this species is re-establishing extirpated populations using translocations and conservation hatcheries. In California USA, two broodstocks (Pilot Peak and Independence Lake) are available for translocation, in addition to potential wild sources. Yet suitability of these sources for re-introduction in different ecosystem types and regions remains an open and important topic. We conducted growth experiments using Lahontan Cutthroat Trout stocked into Sagehen Creek, CA USA. Experiments evaluated both available broodstocks and a smaller sample of wild fish translocated from a nearby creek. Fish from the Independence Lake source had significantly higher growth in weight and length compared to the other sources. Further, Independence Lake fish were the only stock that gained weight on average over the duration of the experiment. Our experiments suggest fish from the Independence Lake brood stock may be useful for re-introduction efforts into small montane headwater streams in California.

Quantifying thermal refugia connectivity by combining temperature modeling, distributed temperature sensing, and thermal infrared imaging

Watershed-scale stream temperature models are often one-dimensional because they require fewer data and are more computationally efficient than two- or three-dimensional models. However, one-dimensional models assume completely mixed reaches and ignore small-scale spatial temperature variability, which may create temperature barriers or refugia for cold-water aquatic species. Fine spatial- and temporal-resolution stream temperature monitoring provides information to identify river features with increased thermal variability. We used distributed temperature sensing (DTS) to observe small-scale stream temperature variability, measured as a temperature range through space and time, within two 400 m reaches in summer 2015 in Nevada's East Walker and main stem Walker rivers. Thermal infrared (TIR) aerial imagery collected in summer 2012 quantified the spatial temperature variability throughout the Walker Basin. We coupled both types of high-resolution measured data with simulated stream temperatures to corroborate model results and estimate the spatial distribution of thermal refugia for Lahontan cutthroat trout and other cold-water species. Temperature model estimates were within the DTS-measured temperature ranges 21 % and 70 % of the time for the East Walker River and main stem Walker River, respectively, and within TIR-measured temperatures 17 %, 5 %, and 5 % of the time for the East Walker, West Walker, and main stem Walker rivers, respectively. DTS, TIR, and modeled stream temperatures in the main stem Walker River nearly always exceeded the 21 ∘C optimal temperature threshold for adult trout, usually exceeded the 24 ∘C stress threshold, and could exceed the 28 ∘C lethal threshold for Lahontan cutthroat trout. Measured stream temperature ranges bracketed ambient river temperatures by −10.1 to +2.3 ∘C in agricultural return flows, −1.2 to +4 ∘C at diversions, −5.1 to +2 ∘C in beaver dams, and −4.2 to 0 ∘C at seeps. To better understand the role of these river features on thermal refugia during warm time periods, the respective temperature ranges were added to simulated stream temperatures at each of the identified river features. Based on this analysis, the average distance between thermal refugia in this system was 2.8 km. While simulated stream temperatures are often too warm to support Lahontan cutthroat trout and other cold-water species, thermal refugia may exist to improve habitat connectivity and facilitate trout movement between spawning and summer habitats. Overall, high-resolution DTS and TIR measurements quantify temperature ranges of refugia and augment process-based modeling.

Population connectivity of adfluvial and stream-resident Lahontan cutthroat trout: implications for resilience, management, and restoration

Population connectivity between resident and migratory cutthroat trout (Oncorhynchus clarkii ssp.) is understudied, but has implications for population viability and management. We examined evidence for stream residency, studied the spatial patterns of stream use by adfluvial and stream-resident trout, and measured migration rates with changing stream depth for Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) in the Summit Lake Basin, Nevada (USA). Passive integrated transponder technology and a fry trap were used to track fish movements and identify the distribution of resident and adfluvial trout. Stream residents were distributed throughout the network. Adfluvial spawners concentrated in lower reaches, but also migrated up to 12.9 km. Adfluvial juveniles migrated to the lake from lower reaches and from upstream of adfluvial spawners. High stream depths coincided with more adfluvial juveniles migrating to the lake and more adfluvial spawners moving into the stream, which led to more accessing the upper watershed. This work shows that connectivity is central to adfluvial–resident Lahontan cutthrout trout population dynamics and may lead to increased probability of persistence — a characteristic of these isolated, threatened trout populations.

Cutthroat Trout: Evolutionary Biology and Taxonomy

<em>Abstract</em>.—A Y chromosome marker shared with Rainbow Trout <em>Oncorhynchus mykiss </em>has been sequenced in many Cutthroat Trout <em>O. clarkii </em>subspecies. The marker is found in and inherited through males. It evolves more slowly than the maternally inherited mitochondrial DNA. The marker delineates the four major groups of Cutthroat Trout: the Lahontan Cutthroat Trout <em>O. c. henshawi </em>subspecies complex, the Yellowstone Cutthroat Trout <em>O. c. bouvieri</em> subspecies complex, Westslope Cutthroat Trout <em>O. c. lewisi</em>, and Coastal Cutthroat Trout <em>O. c. clarkii</em>. The paternal inheritance pattern of the Y marker makes it useful for dissecting the origins of fish with mixed ancestries. We describe a case study using both Y and mitochondrial markers in Lahontan Cutthroat Trout subspecies complex trout populations. Our results confirmed Lahontan Cutthroat Trout affinities for the Paiute Cutthroat Trout <em>O. c. seleniris</em> and Willow–Whitehorse Creek Cutthroat Trout. However, we found evidence of a complex ancestry for Guano Creek, Oregon trout, a group that has been proposed by some to be related to the Alvord Cutthroat Trout, a subspecies thought to be extinct.

Cutthroat Trout: Evolutionary Biology and Taxonomy

<em>Abstract</em>.—There has been considerable interest in the systematics and classification of Cutthroat Trout since the 1800s. Cutthroat Trout native to western North America (currently classified as <em>Oncorhynchus clarkii</em>) have historically been grouped or separated using many different classification schemes. Since the 1960s, Robert Behnke has been a leader in these efforts. Introductions of nonnative trout (other forms of Cutthroat Trout, and Rainbow Trout <em>O. mykiss</em>) have obscured some historical patterns of distribution and differentiation. Morphological and meristic analyses have often grouped the various forms of Cutthroat Trout together based on the shared presence of the “cutthroat mark,” high scale counts along the lateral line, and the presence of basibranchial teeth. Spotting patterns and counts of gill rakers and pyloric caeca have in some cases been helpful in differentiation of groups (e.g., Coastal Cutthroat Trout <em>O. c. clarkii</em>, Lahontan Cutthroat Trout <em>O. c. henshawi</em>, and Westslope Cutthroat Trout <em>O. c. lewisi</em>) currently classified as subspecies. The historical genetic methods of allozyme genotyping through protein electrophoresis and chromosome analyses were often helpful in differentiating the various subspecies of Cutthroat Trout. Allozyme genotyping allowed four major groups to be readily recognized (Coastal Cutthroat Trout, Westslope Cutthroat Trout, the Lahontan Cutthroat Trout subspecies complex, and Yellowstone Cutthroat Trout <em>O. c. bouvieri </em>subspecies complex) while chromosome analyses showed similarity between the Lahontan and Yellowstone Cutthroat trout subspecies complex trout (possibly reflecting shared ancestral type) and differentiated the Coastal and Westslope Cutthroat trouts from each other and those two groups. DNA results may yield higher resolution of evolutionary relationships of Cutthroat Trout and allow incorporation of ancient museum samples. Accurate resolution of taxonomic differences among various Cutthroat Trout lineages, and hybridization assessments, requires several approaches and will aid in conservation of these charismatic and increasingly rare native fishes.