There is currently a great deal of interest in using stable-isotope methods to investigate diet and migratory connections in wild passerines. To apply these methods successfully, it is important to understand how stable isotopes discriminate or change between diet and the tissue of interest and what the element-turnover rates are in metabolically active tissues. Of particular use are studies that sample birds non-destructively through the use of blood and feathers. We investigated patterns of isotopic discrimination between diet and blood and feathers of Garden Warblers (Sylvia borin) raised on an isotopically homogeneous diet (48% C, 5% N) and then switched to one of two experimental diets, mealworms (56.8% C, 8.3% N) and elderberries, Sambucus niger (47.4% C, 1.5% N). We established that the discrimination factors between diet and blood appropriate for stable carbon (δ13C) and nitrogen (δ15N) isotopes are +1.7‰ and +2.4‰, respectively. For feathers, these values were +2.7‰ and +4‰, respectively. Turnover of elemental nitrogen in whole blood was best approximated by an exponential-decay model with a half-life of 11.0 ± 0.8 days (mean ± SD). Corresponding turnover of carbon was estimated to range from 5.0 ± 0.7 to 5.7 ± 0.8 days. We conclude that this decoupling of nitrogen- and carbon-turnover rates can be explained by differences in metabolic routing of dietary macromolecules. Our results suggest that tracking frugivory in migratory passerines that switch diets between insects and fruits may be complicated if only a trophic-level estimate is made using δ15N measurements.