Transient electromagnetic smoke rings in a halfspace during active transmitter excitation

The smoke ring concept is a useful device for understanding how the electromagnetic fields induced in a 1-D earth propagate and diffuse through a medium. Aside from facilitating a physical understanding of field propagation, the smoke ring concept has been used to interpret behavior of vertical and radial magnetic fields at the surface and used to estimate depth of penetration for conductivity-depth transforms. Past studies have focused on the current distribution during the off-time. We calculate and illustrate the current in a halfspace from a half-sine excitation (which provides a continuous induction). In comparison, the current pattern from a continuously excited waveform is more densely distributed near-surface than the off-time current system, suggesting that measurements during a continuously excited on-time are more sensitive to shallow targets. For airborne applications, where the primary field coupling changes and is an important noise source, a primary field-stripping algorithm impacts the current distribution but does not deleteriously affect near-surface sensitivity.

Structure of the native supercoiled flagellar hook as a universal joint

The Bacterial flagellar hook is a short supercoiled tubular structure made from a helical assembly of the hook protein FlgE. The hook acts as a universal joint that connects the flagellar basal body and filament, and smoothly transmits torque generated by the rotary motor to the helical filament propeller. In peritrichously flagellated bacteria, the hook allows the filaments to form a bundle behind the cell for swimming, and for the bundle to fall apart for tumbling. Here we report a native supercoiled hook structure at 3.6 Å resolution by cryoEM single particle image analysis of the polyhook. The atomic model built into the three-dimensional (3D) density map reveals the changes in subunit conformation and intersubunit interactions that occur upon compression and extension of the 11 protofilaments during their smoke ring-like rotation. These observations reveal how the hook functions as a dynamic molecular universal joint with high bending flexibility and twisting rigidity.

Structure of the native supercoiled flagellar hook as a universal joint

Bacteria swim in viscous liquid environments by using the flagellum1–3. The flagellum is composed of about 30 different proteins and can be roughly divided into three parts: the basal body, the hook and the filament. The basal body acts as a rotary motor powered by ion motive force across the cytoplasmic membrane as well as a protein export apparatus to construct the axial structure of the flagellum. The filament is as a helical propeller, and it is a supercoiled form of a helical tubular assembly consisting of a few tens of thousands of flagellin molecules4. The hook is a relatively short axial segment working as a universal joint connecting the basal body and the filament for smooth transmission of motor torque to the filament5,6. The structure of hook has been studied by combining X-ray crystal structure of a core fragment of hook protein FlgE and electron cryomicroscopy (cryoEM) helical image analysis of the polyhook in the straight form and has given a deep insight into the universal joint mechanism7. However, the supercoiled structure of the hook was an approximate model based on the atomic model of the straight hook without its inner core domain7 and EM observations of supercoiled polyhook by freeze-dry and Pt/Pd shadow cast8. Here we report the native supercoiled hook structure at 3.1 Å resolution by cryoEM single particle image analysis of the polyhook. The atomic model built on the three-dimensional (3D) density map show the actual changes in subunit conformation and intersubunit interactions upon compression and extension of the 11 protofilaments that occur during their smoke ring-like rotation and allow the hook to function as a dynamic molecular universal joint with high bending flexibility and twisting rigidity.

Transient electromagnetic fields of a buried horizontal magnetic dipole

Electromagnetic surveys using a vertical transmitter loop are common in land, marine, and airborne geophysical exploration. Most of these horizontal magnetic dipole (HMD) systems operate in the frequency domain, measuring the time derivative of the induced magnetic fields, and therefore a majority of studies have focused on this subset of field measurements. We examine the time-domain electromagnetic response of a HMD including the electric fields and corresponding smoke rings produced in a conductive half-space. Cases of a dipole at the surface and buried within the earth are considered. Results indicate that when the current in the transmitter is rapidly switched off, a single smoke ring is produced within the plane of the vertical transmitter loop, which is then distorted by the air-earth interface. In this situation, the circular smoke ring, which would normally diffuse symmetrically away from the source in a whole space, is approximately transformed into an ellipse, with a vertical major axis at an early time and a horizontal major axis at a late time. As measured from the location of the transmitter, the depth of investigation and lateral footprint of such a system increases with burial depth. It is also observed that the electric field measured in the direction of the magnetic dipole only contains a secondary response related to the charge accumulation on any horizontal conductivity boundaries because the primary field is always absent. This field component can be expressed analytically in terms of a static and time-varying field, the latter term adding spatial complexity to the total horizontal electric field at the earth surface at early times. Applications of this theoretical study include the design of time-domain induction-logging tools, crossborehole electromagnetic surveys, underground mine expansion work, mine rescue procedures, and novel marine electromagnetic experiments.