Variation in Tracheid Dimensions of Conifer Xylem Reveals Evidence of Adaptation to Environmental Conditions

Background: Globally distributed extant conifer species must adapt to various environmental conditions, which would be reflected in their xylem structure, especially in the tracheid characteristics of earlywood and latewood. A comparative study of conifer species might shed light on how xylem structure responds to environmental conditions. With an anatomical trait dataset of 79 conifer tree species growing throughout China, an interspecific study within a phylogenetic context was conducted to quantify variance of tracheid dimensions and their response to climatic and soil conditions. Results: There was a significant difference in tracheid diameter between early- and latewood while no significant difference was detected in tracheid wall thickness through a phylogenetically paired t-test. Most of the tracheid dimensional traits were positively related to each other based on phylogenetic independent contrast (PIC) analyses, and tracheid structure could be accounted for by the first and second PCA axes. Through a phylogenetic principle component analysis (pPCA), Pinaceae species were found to be strongly divergent in their tracheid structure in contrast to a conservative tracheid structure in species of Cupressaceae, Taxaceae and Podocarpaceae. Meanwhile, tracheid wall thickness decreased from high to low latitudes in both earlywood and latewood, with tracheid diameter decreasing for latewood only. According to the most parsimonious phylogenetic general least square models (PGLS), environment and phylogeny together could explain about 21%~56% of tracheid structure variance, suggesting both genetics and the environment contribute to tracheid characteristics. Conclusions: The large variability of tracheid traits observed along an environmental gradient across China suggests that xylem structure was strongly constrained by the environmental conditions in temperate monsoonal climates and thus could be regarded as an ecological strategy for adapting to environmental stresses, especially freezing and drought. Our results provide insights into the effects of climate and soil on the xylem structure of conifer species thus furthering our understanding of the trees’ response to global change and guiding forest management.

A Phylogenetic Independent Contrast Method under the Ornstein-Uhlenbeck Model and its Applications in Correlated Evolution

Phylogenetic comparative methods are essential in studying the evolution of traits across a phylogeny. Felsenstein's phylogenetic independent contrast (PIC) method and the generalized least squares (GLS) regression were often utilized to study whether evolutionary changes between traits were correlated. However, a neutral Brownian model is assumed in the PIC method, which impacts the performance of the PIC method when the trait is subject to adaptation. In recent years, the Ornstein-Uhlenbeck (OU) model has attracted increasing attention in studying the evolution of traits with stabilizing selection. In this study, we extended Felsenstein's PIC method under the OU model, which we termed OU-PIC. We simulated trait evolution under the OU model on phylogenetic trees with 8, 10, and 55 species. Compared to the PIC method, the OU-PIC method with correct stabilizing selection parameters achieved an appropriate type I error rate, the highest test power, and the lowest mean squared error. We presented a concise proof of the intrinsic connection between the OU-PIC and the generalized least squares (GLS) regression method in evaluating correlated evolution under the OU model. The OU-PIC method has a broad range of applications when trait evolution could be sufficiently modeled by the OU process. Compared with other phylogenetic comparative methods, OU-PIC avoids the inverse of the covariance matrix and would facilitate the analysis of correlated evolution on large phylogenies.

Genome size variation in deep-sea amphipods

Genome size varies considerably across taxa, and extensive research effort has gone into understanding whether variation can be explained by differences in key ecological and life-history traits among species. The extreme environmental conditions that characterize the deep sea have been hypothesized to promote large genome sizes in eukaryotes. Here we test this supposition by examining genome sizes among 13 species of deep-sea amphipods from the Mariana, Kermadec and New Hebrides trenches. Genome sizes were estimated using flow cytometry and found to vary nine-fold, ranging from 4.06 pg (4.04 Gb) in Paralicella caperesca to 34.79 pg (34.02 Gb) in Alicella gigantea . Phylogenetic independent contrast analysis identified a relationship between genome size and maximum body size, though this was largely driven by those species that display size gigantism. There was a distinct shift in the genome size trait diversification rate in the supergiant amphipod A. gigantea relative to the rest of the group. The variation in genome size observed is striking and argues against genome size being driven by a common evolutionary history, ecological niche and life-history strategy in deep-sea amphipods.

Hydraulic conductance and the maintenance of water balance in flowers

Flowers face desiccating conditions, yet little is known about their ability to transport water. We quantified variability in floral hydraulic conductance (Kflower) for 20 species from 10 families and related it to traits hypothesized to be associated with liquid and vapor phase water transport. Basal angiosperm flowers had trait values associated with higher water and carbon costs than monocot and eudicot flowers. Kflower was coordinated with water supply (vein length per area, VLA) and loss (minimum epidermal conductance, gmin) traits among the magnoliids, but was insensitive to variation in these traits among the monocots and eudicots. Phylogenetic independent contrast (PIC) correlations revealed that few traits had undergone coordinated evolution. However, VLA and the desiccation time (Tdes), the quotient of water content and gmin, had significant trait and PIC correlations. The near absence of stomata from monocot and eudicot flowers may have been critical in minimizing water loss rates among these clades. Early-divergent, basal angiosperm flowers maintain higher Kflower due to traits associated with high rates water loss and water supply, while monocot and eudicot flowers employ a more conservative strategy of limiting water loss and may rely on stored water to maintain turgor and delay desiccation.

Breeding bird density does not drive vocal individuality

Many species produce individually specific vocalizations and sociality is a hypothesized driver of such individuality. Previous studies of how social variation influenced individuality focused on colonial or non-colonial avian species, and how social group size influenced individuality in sciurid rodents. Since sociality is an important driver of individuality, we expected that bird species that defend nesting territories in higher density neighborhoods should have more individually-distinctive calls than those that defend nesting territories in lower-density neighborhoods. We used Beecher’s information statistic to quantify individuality, and we examined the relationship between bird density (calculated with point-counts) and vocal individuality on seven species of passerines. We found non-significant relationships between breeding bird density and vocal individuality whether regressions were fitted on species values, or on phylogenetically-independent contrast values. From these results, we infer that while individuality may be explained by social factors, breeding bird density is unlikely to be generally important in driving the evolution of individually-specific vocalizations.

The relationships between brain regions and forelimb dexterity in marsupials (Marsupialia): a comparative test of the principle of proper mass

A behavioural index of forelimb dexterity and comparative statistics were used to analyse the relationships between proximal (shoulder, upper and lower forelimb) and distal (wrist, forepaw, digits) forelimb dexterity and four aspects of brain morphology (overall brain, cortex, cerebellum and telencephalon sizes) in 18 species of marsupials. On the basis of the principle of proper mass, it was expected that an increase in forelimb dexterity (either proximal or distal) would be positively correlated with the size of the brain and the three brain components. Using independent contrast analysis to remove the effects of phylogeny revealed three significant correlations between: cortex size and distal dexterity, cerebellum size and proximal dexterity, and telencephalon size and distal dexterity. The relationship between cortex size and distal dexterity was subsequently corroborated by Spearman rank correlations. These results suggest that the execution of finely coordinated forelimb movements may not be dependent upon overall brain size, but may be dependent upon the size of brain components, thus supporting the principle of proper mass.