Genomic Tools to Accelerate Improvement in Okra (Abelmoschus esculentus)

Okra (Abelmoschus esculentus L. Moench), is an important vegetable crop with limited studies on genomics. It is considered as an essential constituent for balanced food due to its dietary fibers, amino-acid and vitamins. It is most widely cultivated for its pods throughout Asia and Africa. Most of the okra cultivation is done exclusively in the developing countries of Asia and Africa with very poor productivity. India ranks first in the world with a production of 6.3 million MT (72% of the total world production). Cultivated okra is mostly susceptible to a large number of begomoviruses. Yellow vein mosaic disease (YVMD) caused by Yellow vein mosaic virus (YVMV) of genus Begomovirus (family Geminiviridae) results in the serious losses in okra cultivation. Symptoms of YVMD are chlorosis and yellowing of veins and veinlets at various levels, small size leaves, lesser and smaller fruits, and stunting growth. The loss in yield, due to YVMD in okra was found ranging from 30 to 100% depending on the age of the plant at the time of infection. Exploitation of biotechnological tools in okra improvement programmes is often restricted, due to the non availability of abundant polymorphic molecular markers and defined genetic maps. Moreover, okra genome is allopolyploid in nature and possess a large number of chromosomes (2n = 56–196) which makes it more complicated. Genomics tools like RNA- seq. for transcriptome analysis has emerged as a powerful tool to identify novel transcript/gene sequences in non-model plants like okra.

Screening of Okra Varieties for Resistance to Okra Yellow Vein Mosaic Disease under Field Conditions

Okra (Abelmoschus esculentus L.) can contract okra yellow vein mosaic disease (OYVMD) caused by Bhendi yellow vein mosaic virus (genus: Begomovirus and family: Geminiviridae), vectored by whitefly (Bemisia tabaci). This study was carried out to screen okra varieties for resistance to OYVMD and to determine the correlation of vector population with the severity of the disease. Six varieties namely, Tulsi, Durgah, Sabz Pari, Sarahariya, Ramaan Kirshna and Pooja were grown under field conditions at localities of Shahpur, Tando Adam and Peer Kathi during rabi (winter cropping) and kharif (summer cropping) seasons during 2016 and 2017, respectively. The first incidence percent of the disease was recorded in the 8th week during rabi and the 6th week during kharif growing season. The Tulsi variety remained disease-free during both growing seasons. A significantly lower disease incidence % was recorded in Sabz Pari (29.32%) and Sarahariya (30.09%) varieties than Durgah, Ramaan Kirshna and Pooja during the rabi growing season. Both varieties were disease-free during the kharif season. There was remarkable variation in disease severity recorded in okra varieties at different trials during rabi and kharif seasons using a 0-6 rating scale (i.e., 0 = The disease-free plants, 1 = 1-10 % vein clearing, 2 = 11-25 % vein yellowing of small leaves , 3 = 26-50 % yellow network on some leaves, 4 = 51-60 % yellow network on all leaves, 5 = 60-70 % complete leaves turn yellow or cream color and 6 = 70 % plant stunted, deformed and small fruit and whole plants becomes colorless). Whitefly appeared in the 5th week during the rabi and 4th week during the kharif growing seasons. Vector population during the rabi growing season was significantly higher than in the kharif season. There was a nonsignificant relationship between disease severity and whitefly population in Ramaan Kirshna, Sarahariya, and Sabz Pari varieties. The disease severity in the Pooja variety showed a significant relationship with vector population, but only in the Tando Adam trial (R2= 0.7455, P= 0.0084), whereas the Durgah variety showed a significant relationship between disease severity and vector population in Shahpur (R2= 0.6615, P= 0.0267) and Tando Adam trials (R2= 0.8235, P= 0.0018). The same variety showed a nonsignificant relationship between disease severity and vector population in the Peer Kathi trial. It is concluded that Sabz Pari and Tulsi varieties are resistant to the disease

Evaluation of genetic variability between yellow vein mosaic disease resistant gamma-irradiated okra mutant and parent

Okra (Abelmoschus esculentus L. Moench) is a member of the Malvaceae family. It has been cultivated as one of the most important fruit vegetables in various tropical countries. In okra, the Yellow Vein Mosaic Disease (YVMD) is caused by more than ten different viruses and the widespread incidence of disease transmitted by the vector Bemisia tabaci (Genn.) has highly affected the successful cultivation and production of the crop. Mutation breeding using radiations is one of the promising methods to get disease resistant elite cultivars of various crops. In this study, attempts were made to evaluate the genetic variability of gamma-ray irradiated mutant of okra. Four ISSR primers generated 26 amplified fragments. Of the 26 fragments, the lowest number of fragments (5) was produced by the primer ISSR12. Between the parent (P) and mutant (M4; mutant from fourth-generation) varieties of okra, primer ISSR07, primer ISSR16 and primer ISSR21 produced two monomorphic bands and three polymorphic bands (60% polymorphism) whereas primer ISSR12 produced one monomorphic band and three polymorphic bands (75% polymorphism). The mean percentage of polymorphism generated by four primers was 63.75%. Although the level of polymorphism exhibited by different primers varied from intermediate (60%) to high (75%), all primers could distinguish parent and gamma-irradiated mutant varieties of okra.