convergence diagnostics
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scholarly journals Postprocessing of MCMC

2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Leah F. South ◽  
Marina Riabiz ◽  
Onur Teymur ◽  
Chris J. Oates
Keyword(s):  
Markov Chain ◽  
General Purpose ◽  
Annual Review ◽  
Publication Date ◽  
Trade Off ◽  
Control Variate ◽  
Convergence Diagnostics ◽  
Bias Variance ◽  
Review State ◽  
Quantities Of Interest

Markov chain Monte Carlo is the engine of modern Bayesian statistics, being used to approximate the posterior and derived quantities of interest. Despite this, the issue of how the output from a Markov chain is postprocessed and reported is often overlooked. Convergence diagnostics can be used to control bias via burn-in removal, but these do not account for (common) situations where a limited computational budget engenders a bias-variance trade-off. The aim of this article is to review state-of-the-art techniques for postprocessing Markov chain output. Our review covers methods based on discrepancy minimization, which directly address the bias-variance trade-off, as well as general-purpose control variate methods for approximating expected quantities of interest. Expected final online publication date for the Annual Review of Statistics and Its Application, Volume 9 is March 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

scholarly journals ABE24: MHC Class I A*0201- GILGFVFTL-Vβ17Vα10.2 TCR complex: convergence diagnostics of internal energy

2021 ◽  
Author(s):  
Georgios S.E. Antipas
Keyword(s):  
Internal Energy ◽  
Mhc Class I ◽  
Class I ◽  
Convergence Diagnostics

ABE24: MHC Class I A*0201- GILGFVFTL-Vβ17Vα10.2 TCR complex: convergence diagnostics of internal energy

scholarly journals ABD24: MHC Class I A*0201- GILGFVFTL-Vβ17Vα10.2 TCR complex: convergence diagnostics of number density

2021 ◽  
Author(s):  
Georgios S.E. Antipas
Keyword(s):  
Mhc Class I ◽  
Class I ◽  
Number Density ◽  
Convergence Diagnostics

ABD24: MHC Class I A*0201- GILGFVFTL-Vβ17Vα10.2 TCR complex: convergence diagnostics of number density

scholarly journals ABD23: MHC Class I H-2Kbm3- EQYKFYSV-2C TCR complex: convergence diagnostics of number density

2021 ◽  
Author(s):  
Georgios S.E. Antipas
Keyword(s):  
Mhc Class I ◽  
Class I ◽  
Number Density ◽  
Convergence Diagnostics

ABD23: MHC Class I H-2Kbm3- EQYKFYSV-2C TCR complex: convergence diagnostics of number density

scholarly journals ABE23: MHC Class I H-2Kbm3- EQYKFYSV-2C TCR complex: convergence diagnostics of internal energy

2021 ◽  
Author(s):  
Georgios S.E. Antipas
Keyword(s):  
Internal Energy ◽  
Mhc Class I ◽  
Class I ◽  
Convergence Diagnostics

ABE23: MHC Class I H-2Kbm3- EQYKFYSV-2C TCR complex: convergence diagnostics of internal energy

scholarly journals ABE26: MHC Class I A*0201-LLFGYPRYV-A6 TCR complex: convergence diagnostics of internal energy

2021 ◽  
Author(s):  
Georgios S.E. Antipas ◽  
Nikolaos Ntallis
Keyword(s):  
Internal Energy ◽  
Mhc Class I ◽  
Class I ◽  
Convergence Diagnostics

ABE26: MHC Class I A*0201-LLFGYPRYV-A6 TCR complex: convergence diagnostics of internal energy

scholarly journals ABE25: MHC Class I A*0201-LLFGYAVYV-A6 TCR complex: convergence diagnostics of internal energy

2021 ◽  
Author(s):  
Georgios S.E. Antipas ◽  
Nikolaos Ntallis
Keyword(s):  
Internal Energy ◽  
Mhc Class I ◽  
Class I ◽  
Convergence Diagnostics

ABE25: MHC Class I A*0201-LLFGYAVYV-A6 TCR complex: convergence diagnostics of internal energy

scholarly journals ABE10: MHC Class I H-2Kb-INFDFNTI-BM3.3 TCR complex: convergence diagnostics of internal energy

2021 ◽  
Author(s):  
Georgios S.E. Antipas ◽  
Nikolaos Ntallis ◽  
Konstantinos Karalis
Keyword(s):  
Internal Energy ◽  
Mhc Class I ◽  
Class I ◽  
Convergence Diagnostics

ABE10: MHC Class I H-2Kb-INFDFNTI-BM3.3 TCR complex: convergence diagnostics of internal energy

scholarly journals MHC Class I A*0201-LLFGYPVYV-B7 TCR complex: convergence diagnostics of number density

2020 ◽  
Author(s):  
Georgios S.E. Antipas ◽  
Nikolaos Ntallis
Keyword(s):  
Mhc Class I ◽  
Class I ◽  
Number Density ◽  
Convergence Diagnostics

MHC Class I A*0201-LLFGYPVYV-B7 TCR complexConvergence diagnostics of number density

scholarly journals MHC Class I A*0201-LLFGYPVYV-A6 TCR complex: convergence diagnostics of number density

2020 ◽  
Author(s):  
Georgios S.E. Antipas ◽  
Nikolaos Ntallis
Keyword(s):  
Mhc Class I ◽  
Class I ◽  
Number Density ◽  
Convergence Diagnostics

MHC Class I A*0201-LLFGYPVYV-A6 TCR complexConvergence diagnostics of number density

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