Effect of a mannose to the interactions between Naegleria fowleri and pathogenic bacteria

Introduction and Aim: In this study, the interaction between pathogenic Naegleria fowleri and pathogenic bacteria such as methicillin-resistant Staphylococcus aureus (MRSA), Enterococcus faecalis and Salmonella typhi was analyzed by a monosaccharide of mannose. Moreover, since the form of N. fowleri was found in diseases as cysts, the interaction between cysts and bacteria was analyzed. Materials and Methods: In order to analyze the role of a monosaccharide called mannose in bacterial interaction, the analysis of bacterial association, invasion, and survival for amoeba treated with mannose was performed. N. fowleri trophozoites or cysts were pre-treated with a mannose at a concentration of 10, 50 and 100 mM for 1 hr at 37°C. Results: The MRSA association was hardly suppressed until the concentration of mannose was 50 mM, but its association was reduced by about 168% to N. fowleri trophozoites by 100 mM mannose. Compared to the results for MRSA, the association of E. faecalis had little effect by mannose. Very interestingly, although S. typhi showed much higher invasion than the above MRSA and E. faecalis, it did not survive at all within N. fowleri trophozoites. Ten mM mannose showed a nearly similar 1% association with N. fowleri cyst treated, but not with 50 mM and 100 mM mannose treated N. fowleri cyst at all. Conclusion: The association and invasion of S. typhi was highest for N. fowleri trophozoites and cysts, but the three bacteria did not survive in N. fowleri trophozoites and cysts.

Linking Inflammatory Bowel Disease Symptoms to Changes in the Gut Microbiome Structure and Function

Inflammatory bowel disease (IBD) is a chronic disease of the gastrointestinal tract that is often characterized by abdominal pain, rectal bleeding, inflammation, and weight loss. Many studies have posited that the gut microbiome may play an integral role in the onset and exacerbation of IBD. Here, we present a novel computational analysis of a previously published IBD dataset. This dataset consists of shotgun sequence data generated from fecal samples collected from individuals with IBD and an internal control group. Utilizing multiple external controls, together with appropriate techniques to handle the compositionality aspect of sequence data, our computational framework can identify and corroborate differences in the taxonomic profiles, bacterial association networks, and functional capacity within the IBD gut microbiome. Our analysis identified 42 bacterial species that are differentially abundant between IBD and every control group (one internal control and two external controls) with at least a twofold difference. Of the 42 species, 34 were significantly elevated in IBD, relative to every other control. These 34 species were still present in the control groups and appear to play important roles, according to network centrality and degree, in all bacterial association networks. Many of the species elevated in IBD have been implicated in modulating the immune response, mucin degradation, antibiotic resistance, and inflammation. We also identified elevated relative abundances of protein families related to signal transduction, sporulation and germination, and polysaccharide degradation as well as decreased relative abundance of protein families related to menaquinone and ubiquinone biosynthesis. Finally, we identified differences in functional capacities between IBD and healthy controls, and subsequently linked the changes in the functional capacity to previously published clinical research and to symptoms that commonly occur in IBD.

Virus-bacterial association of SARS-CoV-2 with mycoplasma as one of the possible causes of severe forms of COVID-19

The article formulates a hypothesis about the virus-bacterial association SARS-CoV-2 and the representative of the class Mollicutes as the main reason for the development of severe forms of COVID-19.

Bacterial association and comparison between lung and intestine in rats

The association between lung and intestine has already been reported, but the differences in community structures or functions between lung and intestine bacteria yet need to explore. To explore the differences in community structures or functions, the lung tissues and fecal contents in rats were collected and analyzed through 16S rRNA sequencing. It was found that intestine bacteria was more abundant and diverse than lung bacteria. In intestine bacteria, Firmicutes and Bacteroides were identified as major phyla while Lactobacillus was among the most abundant genus. However, in lung the major identified phylum was Proteobacteria and genus Pseudomonas was most prominent genus. On the other hand, in contrast the lung bacteria was more concentrated in cytoskeleton and function in energy production and conversion. While, intestine bacteria were enriched in RNA processing, modification chromatin structure, dynamics and amino acid metabolism. The study provides the basis for understanding the relationships between lung and intestine bacteria.