River Streamflow, Remotely Sensed Water Quality, and Benthic Composition of Previously Undescribed Nearshore Coral Reefs in Northern Puerto Rico

Land-based sediment stress represents a threat to many coral reefs in Puerto Rico primarily as a result of unrestricted land cover/land use changes and poor best management practices. The effects of such stresses have been documented along most coasts around the island. However, little attention has been paid to reefs located on the north coast, and very little is known about their composition and current state. Here, we present a study characterizing riverine inputs, water quality conditions, and benthic composition of two previously undescribed coral reefs (Tómbolo and Machuca reefs) located just eastward of the Río Grande de Manatí outlet in north-central Puerto Rico. This study utilizes a time series of remotely sensed ocean color products [diffuse vertical attenuation coefficient at 490 nm (Kd490) and chlorophyll-a concentration (Chl-a) estimated with data from the Visible Infrared Imaging Radiometer Suite (VIIRS)] to characterize water quality in this coastal region. In general, the months with relatively high mean daily river streamflow also coincide with months having the highest proportion of eastward wave direction, which can promote the eastward influence of river waters toward the two coral reefs sites. Kd490 and Chl-a showed a higher riverine influence closer to the watershed outlet. Kd490 and Chl-a monthly peaks also coincide with river streamflow highs, particularly at those pixels closer to shore. Tómbolo Reef, located farther eastward of the river outlet, shows a well-developed primary reef framework mainly composed of threatened reef-building species (Acropora palmata, Pseudodiploria) and high coral cover (19–51%). The benthos of Machuca Reef, located closer to the river outlet, is dominated by macroalgae with a significantly lower coral cover (0.2–2.7%) mainly composed of “weedy” coral species (Porites astreoides and Siderastrea radians). Cover of major benthic components correlates with distance from the river outlet, and with gradients in Kd490 and Chl-a, with higher coral cover and lower macroalgal cover farther from the river outlet. Coral cover at Tómbolo Reef is higher than what has been reported for similar sites around Puerto Rico and other Caribbean islands showing its ecological importance, and as up until now, an unrecognized potential refuge of reef-building threatened coral species.

Effects of the Stony Coral Tissue Loss Disease Outbreak on Coral Communities and the Benthic Composition of Cozumel Reefs

In the Caribbean, disease outbreaks have emerged as significant drivers of coral mortality. Stony Coral Tissue Loss Disease (SCTLD) is a novel white plague-type disease that was first reported off the Florida coast in 2014. This disease affects >20 coral species and is spreading rapidly throughout the Caribbean. In December 2018, SCTLD reached southwestern (SW) Cozumel, one of the healthiest reef systems in the Caribbean. In this study, we integrate data from multiple survey protocols conducted between July 2018 and April 2020 to track the progression of the outbreak in SW Cozumel and to quantify the impacts of SCTLD on coral communities and the benthic composition of reefs. Given that the SCTLD outbreak coincided with a period of prolonged thermal stress that concluded in widespread coral bleaching in autumn 2019, we also investigated whether this event further exacerbated coral mortality. Our findings show that SCTLD spread throughout SW Cozumel in only 2 months and reached a peak after only 5 months. By the summer of 2019, most of the afflicted corals were already dead. Species of the families Meandrinidae, Faviinae, and Montastraeidae showed 33–95% mortality. The widespread coral die-off caused an overall loss of 46% in coral cover followed by a rapid increase of algae cover across all surveyed reefs that persisted until at least April 2020. In November 2019, more than 15% of surveyed coral colonies were bleached. However, we did not find that bleaching further increased coral mortality at either the colony or the community level, which suggests that the coral communities were able to recover from this event despite still being affected by the disease. In conclusion, SCTLD is radically changing the ecology of coral reefs by decimating the populations of several key reef-builders and reconfiguring the benthic assemblages. The actions needed to restore coral populations have to be accompanied by stringent controls related to the effects of climate change, coastal development, and wastewater treatment to improve coral conditions and ecosystem resilience.

Twenty years of change in benthic communities across the Belizean Barrier Reef

Disease, ocean warming, and pollution have caused catastrophic declines in the cover of living coral on reefs across the Caribbean. Subsequently, reef-building corals have been replaced by invertebrates and macroalgae, leading to changes in ecological functioning. We describe changes in benthic community composition and cover at 15 sites across the Belizean Barrier Reef (BBR) following numerous major disturbances—bleaching, storms, and disease outbreaks—over the 20-year period 1997–2016. We tested the role of potential drivers of change on coral reefs, including local human impacts and ocean temperature. From 1997 to 2016, mean coral cover significantly declined from 26.3% to 10.7%, while macroalgal cover significantly increased from 12.9% to 39.7%. We documented a significant decline over time of the reef-building corals Orbicella spp. and described a major shift in benthic composition between early sampling years (1997–2005) and later years (2009¬–2016). The covers of hard-coral taxa, including Acropora spp., M. cavernosa, Orbicella spp., and Porites spp., were negatively related to marine heatwave frequency. Only gorgonian cover was related, negatively, to our metric of the magnitude of local impacts (the Human Influence Index). Changes in benthic composition and cover were not associated with local protection or fishing. This result is concordant with studies throughout the Caribbean that have documented living coral decline and shifts in reef-community composition following disturbances, regardless of local fisheries restrictions. Our results suggest that benthic communities along the BBR have experienced disturbances that are beyond the capacity of the current management structure to mitigate. We recommend that managers devote greater resources and capacity to enforce and expand existing marine protected areas and that government, industry, and the public act to reduce global carbon emissions.

High-Resolution Satellite Imagery to Assess Sargassum Inundation Impacts to Coastal Areas

A change detection analysis utilizing Very High-resolution (VHR) satellite imagery was performed to evaluate the changes in benthic composition and coastal vegetation in La Parguera, southwestern Puerto Rico, attributable to the increased influx of pelagic Sargassum spp and its accumulations in cays, bays, inlets and near-shore environments. Satellite imagery was co-registered, corrected for atmospheric effects, and masked for water and land. A Normalized Difference Vegetation Index (NDVI) and an unsupervised classification scheme were applied to the imagery to evaluate the changes in coastal vegetation and benthic composition. These products were used to calculate the differences from 2010 baseline imagery, to potential hurricane impacts (2018 image), and potential Sargassum impacts (2020 image). Results show a negative trend in Normalized Difference Vegetation Index (NDVI) from 2010 to 2020 for the total pixel area of 24%, or 546,446 m2. These changes were also observed in true color images from 2010 to 2020. Changes in the NDVI negative values from 2018 to 2020 were higher, especially for the Isla Cueva site (97%) and were consistent with the field observations and drone surveys conducted since 2018 in the area. The major changes from 2018 and 2020 occurred mainly in unconsolidated sediments (e.g. sand, mud) and submerged aquatic vegetation (e.g. seagrass, algae), which can have similar spectra limiting the differentiation from multi-spectral imagery. Areas prone to Sargassum accumulation were identified using a combination of 2018 and 2020 true color VHR imagery and drone observations. This approach provides a quantifiable method to evaluate Sargassum impacts to the coastal vegetation and benthic composition using change detection of VHR images, and to separate these effects from other extreme events.

Similarity in benthic habitat and fish assemblages in the upper mesophotic and shallow water reefs in the West Philippine Sea

The South China Sea (SCS) is a biodiversity hotspot, however, most biodiversity surveys in the region are confined to shallow water reefs. Here, we studied the benthic habitat and fish assemblages in the upper mesophotic coral ecosystems (MCEs; 30–40 m) and SWRs (8–22 m) at three geographic locations (Luzon Strait; Palawan; and the Kalayaan Group of Islands) in the eastern SCS (also called the West Philippine Sea) using diver-based survey methods. Mean coral genera and fish species richness ranged from 17–25 (per 25 m2) and 11–17 (per 250 m2) in MCEs, respectively; although none of these were novel genera/species. Coral and fish assemblages were structured more strongly by location than by depth. Location differences were associated with the variability in benthic composition, wherein locations with higher hard coral cover had higher coral genera richness and abundance. Locations with higher algae and sand cover had higher diversity and density of fish herbivores and benthic invertivores. Fishing efforts may also have contributed to among-location differences as the highly exploited location had the lowest fish biomass. The low variation between depths may be attributed to the similar benthic composition at each location, the interconnectivity between depths due to hydrological conditions, fish motility, and the common fishing gears used in the Philippines that can likely extend beyond SWRs. Results imply that local-scale factors and anthropogenic disturbances probably dampen across-depth structuring in coral genera and fish species assemblages.

Object-Based Mapping of Coral Reef Habitats Using Planet Dove Satellites

High spatial resolution benthic habitat information is essential for coral reef protection and coastal environmental management. Satellite-based shallow benthic composition mapping offers a more efficient approach than traditional field measurements, especially given the advancements in high spatial and temporal resolution satellite imagery. The Planet Dove satellite constellation now has more than 150 instruments in orbit that offer daily coverage at high spatial resolution (3.7 m). The Dove constellation provides regularly updated imagery that can minimize cloud in tropical oceans where dense cloud cover persists. Daily image acquisition also provides an opportunity to detect time-sensitive changes in shallow benthic habitats following coral bleaching events, storms, and other disturbances. We developed an object-based coral reef habitat mapping approach for Dove and similar multispectral satellites that provides bathymetry estimation, bottom reflectance retrieval, and object-based classification to identify different benthic compositions in shallow coastal environments. We tested our approach in three study sites in the Dominican Republic using 18 Dove images. Benthic composition classification results were validated by field measurements (overall accuracy = 82%). Bathymetry and bottom reflectance significantly contributed to identifying benthic habitat classes with similar surface reflectance. This new object-based approach can be effectively applied to map and manage coral reef habitats.

Benthic structure drives butterflyfish species composition and trophic group abundance

Corals provide structure and food sources vital for the maintenance of coral reef fish diversity. However, coral reefs are currently under threat from climate change, which has led to the largest recorded loss of live coral. The loss of live coral, and corresponding shift in reef benthic composition, are predicted to impact the abundance and composition of coral reef fish species and communities. In this study, we investigate the effect of changes in reef benthic composition (eg. live coral, dead coral, algae), on the diversity and composition in an assemblage of butterflyfish species, in Faafu Atoll in the Maldives after the 2016 bleaching event. We show that differences in community composition of butterflyfish are associated to benthic structure, reflecting species feeding preferences. Interestingly, however, we also show that lower coral cover is not associated to lower abundance and species richness of butterflyfish. Our results suggest that maintenance of coral reef structure after a disturbance provides key microhabitats to accommodate non-corallivorous butterflyfish, thus maintaining abundance and species richness. Overall our study provides support for regulation of richness and abundance of coral reef fish assemblages to short term changes in coral reef benthic composition after disturbance via turnover in composition.

Benthic structure drives butterflyfish species composition and trophic group abundance

Corals provide structure and food sources vital for the maintenance of coral reef fish diversity. However, coral reefs are currently under threat from climate change, which has led to the largest recorded loss of live coral. The loss of live coral, and corresponding shift in reef benthic composition, are predicted to impact the abundance and composition of coral reef fish species and communities. In this study, we investigate the effect of changes in reef benthic composition (eg. live coral, dead coral, algae), on the diversity and composition in an assemblage of butterflyfish species, in Faafu Atoll in the Maldives after the 2016 bleaching event. We show that differences in community composition of butterflyfish are associated to benthic structure, reflecting species feeding preferences. Interestingly, however, we also show that lower coral cover is not associated to lower abundance and species richness of butterflyfish. Our results suggest that maintenance of coral reef structure after a disturbance provides key microhabitats to accommodate non-corallivorous butterflyfish, thus maintaining abundance and species richness. Overall our study provides support for regulation of richness and abundance of coral reef fish assemblages to short term changes in coral reef benthic composition after disturbance via turnover in composition.

Benthic structure drives butterflyfish species composition and trophic group abundance

Corals provide structure and food sources vital for the maintenance of coral reef fish diversity. However, coral reefs are currently under threat from climate change, which has led to the largest recorded loss of live coral. The loss of live coral, and corresponding shift in reef benthic composition, are predicted to impact the abundance and composition of coral reef fish species and communities. In this study, we investigate the effect of changes in reef benthic composition (eg. live coral, dead coral, algae), on the diversity and composition in an assemblage of butterflyfish species, in Faafu Atoll in the Maldives after the 2016 bleaching event. We show that differences in community composition of butterflyfish are associated to benthic structure, reflecting species feeding preferences. Interestingly, however, we also show that lower coral cover is not associated to lower abundance and species richness of butterflyfish. Our results suggest that maintenance of coral reef structure after a disturbance provides key microhabitats to accommodate non-corallivorous butterflyfish, thus maintaining abundance and species richness. Overall our study provides support for regulation of richness and abundance of coral reef fish assemblages to short term changes in coral reef benthic composition after disturbance via turnover in composition.