differential region
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2019 ◽  
Vol 101 (5) ◽  
pp. 875-877
Author(s):  
Angela R Stermer ◽  
Shelby K Wilson ◽  
David Klein ◽  
Susan J Hall ◽  
Kim Boekelheide

Abstract Histone three lysine four dimethylation (H3k4me2) in sperm is conserved across species and is linked to transgenerational epigenetic inheritance. To test whether H3K4me2 is a target for transgenerational inheritance of toxicity, a daily gavage bolus exposure of trichloroethylene (TCE) (1000 mg/kg/day) was given to rats for 14 weeks, then epididymal sperm were isolated and native chromatin immunoprecipitation followed by next generation sequencing (ChIP-seq) of H3K4me2 was performed. Differential region analysis determined there were 2608 significantly differential H3K4me2 regions after TCE exposure, 477 were significantly increased and 2131 were significantly decreased. Z-score enrichment of differential regions determined there were significantly decreased H3k4me2 in the coding and regulatory regions of genes in the PKA signaling pathway. These changes account for TCE induced spermatozoal toxicity and show H3K4me2 is a target for paternal inheritance of toxicity.


2010 ◽  
Vol 15 (4) ◽  
pp. 464-479 ◽  
Author(s):  
Athanasios Metaxas ◽  
Alexis Bailey ◽  
Maria Flavia Barbano ◽  
Lola Galeote ◽  
Rafael Maldonado ◽  
...  

1998 ◽  
Vol 72 (3) ◽  
pp. 2272-2279 ◽  
Author(s):  
Takashi Yugawa ◽  
Hiroshi Amanuma

ABSTRACT We previously reported (N. Watanabe, M. Nishi, Y. Ikawa, and H. Amanuma, J. Virol. 65:132–137, 1991) that the mutant Friend spleen focus-forming virus (F-SFFVMS), which encodes a mutant gp55 membrane glycoprotein with an ecotropic envgp70 sequence, was nonpathogenic. Here we injected the F-SFFVMS–Friend murine leukemia virus (F-MuLV) clone 57 complex into newborn DBA/2 mice. We obtained four groups of pathogenic variant F-SFFV complexes, each showing a different degree of pathogenicity in adult mice and a different gp55 profile. Of these, group 1 variant F-SFFV was particularly interesting, because it was the most frequently obtained and because it produced doublet bands of gp55 (59 and 57 kDa), neither of which reacted with the nonecotropic gp70-specific monoclonal antibody, and because its DNA intermediate did not hybridize with the nonecotropic env-specific probe. Cloning and DNA sequence analysis of the env region of one isolate of the group 1 variant F-SFFV revealed that this virus consisted of two distinct F-SFFV genomes; one (clone 117) differed from the other (clone 118) due to the presence of a 39-bp in-frame deletion. Reconstitution to full-length F-SFFV genomes and a pathogenicity assay showed that each reconstituted F-SFFV was pathogenic, with clone 117 showing a higher degree of pathogenicity than clone 118. Both reconstituted F-SFFVs caused activation of the mouse erythropoietin receptor in the factor-independent cell proliferation assay, although much less efficiently than the wild-type polycythemia-inducing isolate F-SFFVp. Clone 118 produced a gp55 of 59 kDa, while clone 117 produced one of 57 kDa. Clone 118 had a substitution by the F-MuLV clone 57 gp70 sequence, indicating that it was derived from the F-SFFVMS env gene by a homologous recombination with the F-MuLV clone 57 env gene. The site of the 39-bp deletion in clone 117 corresponded to the portion of the clone 118 sequence which was unique to the ecotropic env genes. These results indicated the importance for the biological activity of gp55 of the sequences in the gp70 differential region, which are contained in both polytropic and ecotropic env genes.


Genetics ◽  
1997 ◽  
Vol 146 (3) ◽  
pp. 1061-1069 ◽  
Author(s):  
Michael M Weil ◽  
Barry W Brown ◽  
Dan M Serachitopol

Congenic strains can now be constructed guided by the transmission of DNA markers. This allows not only selection for transmission of a desired, donor-derived differential region but also selection against the transmission of unwanted donor origin genomic material. The additional selection capacity should allow congenic strains to be produced in fewer generations than is possible with random backcrosses. Here, we consider modifications of a standard backcross breeding scheme to produce congenic mice by the inclusion of genotype-based selective breeding strategies. Simulation is used to evaluate the consequences of each strategy on the number of chromosomes that contain unwanted, donor-derived genetic material and the average length of this unwanted donor DNA for each backcross generation. Our prototypic strategy was to choose a single mouse to sire each generation using criteria designed to select against the transmission of chromosomes, other than the one containing the replacement genomic region, that contain any donor origin sequence at all. This chromosome elimination strategy resulted in an average of 16.4 chromosomes free of donor DNA in mice of the third backcross (N3) generation. A strategy based solely on positive selection for the replacement region required six backcross generations to achieve the same results.


1913 ◽  
Vol 13 (1) ◽  
pp. 63-67 ◽  
Author(s):  
A. T. Glenny

One of the fundamental features of Ehrlich's method of standardising diphtheria antitoxic serum is the recognition of the so-called Lo and L+ limits, the L+ dose being the quantity of a toxin which when mixed with one unit of antitoxin and injected subcutaneously into a guinea-pig leaves sufficient excess of toxin free to cause the death of the animal about the fifth day after injection, the Lo dose being the largest quantity which when similarly mixed with one unit of antitoxin fails to produce a local reaction. In the region between the two doses, the so-called “ Differential-Region ” of Ehrlich, one can obtain a series of mixtures which, while they kill the guinea-pig later than the fifth day or not at all, cause local reactions of varying severity increasing as the L+ limit is reached.


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