Easily Implemented Methods of Radiometric Corrections for Hyperspectral–UAV—Application to Guianese Equatorial Mudbanks Colonized by Pioneer Mangroves

Hyper-DRELIO (Hyperspectral DRone for Environmental and LIttoral Observations) is a custom, mini-UAV (unmanned aerial vehicle) platform (<20 kg), equipped with a light push broom hyperspectral sensor combined with a navigation module measuring position and orientation. Because of the particularities of UAV surveys (low flight altitude, small spatial scale, and high resolution), dedicated pre-processing methods have to be developed when reconstructing hyperspectral imagery. This article presents light, easy-implementation, in situ methods, using only two Spectralon® and a field spectrometer, allowing performance of an initial calibration of the sensor in order to correct “vignetting effects” and a field standardization to convert digital numbers (DN) collected by the hyperspectral camera to reflectance, taking into account the time-varying illumination conditions. Radiometric corrections are applied to a subset of a dataset collected above mudflats colonized by pioneer mangroves in French Guiana. The efficiency of the radiometric corrections is assessed by comparing spectra from Hyper-DRELIO imagery to in situ spectrometer measurements above the intertidal benthic biofilm and mangroves. The shapes of the spectra were consistent, and the spectral angle mapper (SAM) distance was 0.039 above the benthic biofilm and 0.159 above the mangroves. These preliminary results provide new perspectives for quantifying and mapping the benthic biofilm and mangroves at the scale of the Guianese intertidal mudbanks system, given their importance in the coastal food webs, biogeochemical cycles, and the sediment stabilization.

Using Artificial Seagrass for Promoting Positive Feedback Mechanisms in Seagrass Restoration

Worldwide, seagrass meadows are under threat. Consequently, there is a strong need for seagrass restoration to guarantee the provision of related ecosystem services such as nutrient cycling, carbon sequestration and habitat provision. Seagrass often grows in vast meadows in which the presence of seagrass itself leads to a reduction of hydrodynamic energy. By modifying the environment, seagrass thus serves as foundation species and ecosystem engineer improving habitat quality for itself and other species as well as positively affecting its own fitness. On the downside, this positive feedback mechanism can render natural recovery of vanished and destroyed seagrass meadows impossible. An innovative approach to promote positive feedback mechanisms in seagrass restoration is to create an artificial seagrass (ASG) that mimics the facilitation function of natural seagrass. ASG could provide a window of opportunity with respect to suitable hydrodynamic and light conditions as well as sediment stabilization to allow natural seagrass to re-establish. Here, we give an overview of challenges and open questions for the application of ASG to promote seagrass restoration based on experimental studies and restoration trials and we propose a general approach for the design of an ASG produced from biodegradable materials. Considering positive feedback mechanisms is crucial to support restoration attempts. ASG provides promising benefits when habitat conditions are too harsh for seagrass meadows to re-establish themselves.

Observations of Tidal Flat Sedimentation within a Native and an Exotic Spartina Species

Field measurements of bed elevation and related wave events were performed within a tidal marsh, on two cordgrass species, Spartina anglica (exotic) and Spartina maritima (native), in the Bay of Arcachon (SW France). Bed- and water-level time series were used to infer on the sediment behavior patterns from short to long term. A consistent response was found between the bed-level variation and the wave forcing, with erosion occurring during storms and accretion during low energy periods. Such behavior was observed within the two species, but the magnitude of bed-level variation was higher within the native than the exotic Spartina. These differences, in the order of millimeters, were explained by the opposite allocation of biomass of the two species. On the long term, the sedimentation/erosion patterns were dominated by episodic storm events. A general sediment deficit was observed on the site, suggested by an overall bed-level decrease registered within both species. However, further verification of within species variation needs to be considered when drawing conclusions. Despite possible qualitative limitations of the experimental design, due to single point survey, this work provides original and considerable field data to the understanding the different species ability to influence bed sediment stabilization and their potential to build marsh from the mudflat pioneer stage. Such information is valuable for coastal management in the context of global change.

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

Benthic diatoms are the main primary producers in shallow freshwater and coastal environments, fulfilling important ecological functions such as nutrient cycling and sediment stabilization. However, little is known about their evolutionary adaptations to these highly structured but heterogeneous environments. Here, we report a reference genome for the marine biofilm-forming diatom Seminavis robusta, showing that gene family expansions are responsible for a quarter of all 36,254 protein-coding genes. Tandem duplications play a key role in extending the repertoire of specific gene functions, including light and oxygen sensing, which are probably central for its adaptation to benthic habitats. Genes differentially expressed during interactions with bacteria are strongly conserved in other benthic diatoms while many species-specific genes are strongly upregulated during sexual reproduction. Combined with re-sequencing data from 48 strains, our results offer insights into the genetic diversity and gene functions in benthic diatoms.

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

Benthic diatoms are the main primary producers in shallow freshwater and coastal environments, fulfilling important ecological functions such as nutrient cycling and sediment stabilization. However, little is known about their evolutionary adaptations to these highly structured but heterogeneous environments. Here, we report a reference genome for the marine biofilm-forming diatom Seminavis robusta, showing that gene family expansions are responsible for a quarter of all 36,254 protein-coding genes. Tandem duplications play a key role in extending the repertoire of specific gene functions, including light and oxygen sensing, which are probably central for its adaptation to benthic habitats. Genes differentially expressed during interactions with bacteria are strongly conserved in other benthic diatoms while many species-specific genes are strongly upregulated during sexual reproduction. Combined with re-sequencing data from 48 strains, our results offer new insights on the genetic diversity and gene functions in benthic diatoms.

The Native Oyster Restoration Alliance (NORA) and the Berlin Oyster Recommendation: bringing back a key ecosystem engineer by developing and supporting best practice in Europe

Efforts to restore the native oyster Ostrea edulis and its associated habitats are gaining momentum across Europe. Several projects are currently running or being planned. To maximize the success of these, it is crucial to draw on existing knowledge and experience in order to design, plan and implement restoration activities in a sustainable and constructive approach. For the development of best practice recommendations and to promote multidimensional knowledge and technology exchange, the Native Oyster Restoration Alliance (NORA) was formed by partners from science, technology, nature conservation, consultancies, commercial producers and policy-makers. The NORA network will enhance scientific and practical progress in flat oyster restoration, such as in project planning and permitting, seed oyster production, disease management and monitoring. It also focuses on joint funding opportunities and the potential development of national and international regulatory frameworks. The main motivation behind NORA is to facilitate the restoration of native oyster habitat within its historic biogeographic range in the North Sea and other European seas along with the associated ecosystem services; services such as enhancing biodiversity, including enhanced fish stocks, nutrient cycling and sediment stabilization. NORA members agreed on a set of joint recommendations and strongly advise that any restoration measure should respect and apply these recommendations: The Berlin Oyster Recommendation is presented here. It will help guide the development of the field by developing and applying best practice accordingly. NORA also aims to combine the outreach activities of local projects for improved community support and awareness and to provide educational material to increase knowledge of the key ecological role of this species and increase awareness among regulators, permit providers and stakeholders. A synthesis of O. edulis restoration efforts in Europe is provided and underlines the general significance in the field.

Seasonal and Basinal Influences on the Formation and Transport of Dissolved Trace Metal Forms in a Mining-Impacted Riverine Environment

The release of nanophase metal particles from sulfide mineral decomposition in mining-impacted environments is a growing concern because of the potential for the transport of nanoscale particles that could increase the distribution of the metals and their environmental impact. An analysis of total (unfiltered) and dissolved (450-nm filtered) metal concentrations in the mining-impacted Coeur d’Alene River indicates the leaching of dissolved metal forms from sediments and transport to and within the river. The distribution of metals between total and dissolved forms is driven by seasonal temperatures, hydraulic gradients, and ligand availability. Cd and Zn were the least influenced by changes in gradient and biological productivity between the upper and lower basins. Cd and Zn primarily travel as dissolved forms, with the lowest ratio of dissolved-to-total concentrations in spring and the highest in summer. Fe and Pb primarily travel as suspended particles, but their dissolved forms were greater during all seasons in the lower basin. A principal components analysis of upper basin data indicates that temperature and conductivity were correlated with dissolved Cd and Zn, and total Fe and Pb were correlated with streamflow. In the lower basin, dissolved Cd and Zn, conductivity, and temperature were correlated, and suspended sediment, total metals, and dissolved Pb, but not streamflow, were correlated. The correlation of metals and sediment in the lower basin is not from erosion but the availability of organic matter and Fe that form a range of dissolved to suspended metal particles. The summer decrease in surface water levels releases sediment porewater containing nanoscale-to-microscale metal particles that are transported to open water, where they may impact human and wildlife health. Such releases are unmitigated with current remediation strategies of sediment stabilization.