Distinct oxygen environments shape picoeukaryote assemblages thriving oxygen minimum zone waters off central Chile

Oxygen minimum zones (OMZs) support ocean biogeochemical cycles of global importance. The OMZ off central Chile is characterized by seasonally variable oxygen concentrations due to upwelling events. Bacterial and archaeal communities from this area have been previously described; however, picoeukaryote communities remain largely unexplored. In order to improve our knowledge on picoeukaryote ecology and the effect of controlling factors on its community structure, environmental parameters and 18S rRNA metabarcoding analyses were performed in water samples collected at several depths at a time series station on the continental shelf in March, May and August. Our results showed that oxygen, nitrate, silicate and temperature are relevant factors shaping the picoeukaryote community structure. Overall, according to our sequence dataset, the OMZ was dominated by Dinophyceae members including marine parasitic dinoflagellates. Moreover, dysoxic and suboxic conditions were enriched by fungi and phagotrophic protists from Ustilaginomycetes, Bicoecea and Choanoflagellatea. The latter is particularly relevant in the understanding of metazoan evolution and the origins of multicellularity in low-oxygen environments. Picoeukaryote communities changed significantly over the 3 months sampled with variations in water column stratification, including the occurrence of a winter bloom of Mamiellales. Altogether, this study reveals a great diversity and dynamics of picoeukaryotes inhabiting a coastal OMZ.

Development and Identification of Expressed Sequence Tag-based SSR Markers Associated with the Heterostyly Trait in Primula forbesii

Heterostylous Primula forbesii is an important ornamental flower in China because of its long-lasting flowers and winter bloom. This study aimed to develop markers of expressed sequence tag–simple sequence repeats (EST-SSRs) that are associated with heterostyly and that can be used for molecular-assisted selective breeding in P. forbesii. We investigated 114,474 unigenes and identified 25,095 SSRs in P. forbesii. Dinucleotide repeats (46.14%), mononucleotide repeats (44.65%), and trinucleotide repeats (8.27%) were the most abundant SSRs. Among the 25,095 SSRs, 10,645 SSR primer pairs were successfully designed, of which 130 primer pairs were randomly selected for further amplification validation using eight accessions of P. forbesii; 98 pairs produced clear and stable polymerase chain reaction (PCR) products, and 28 pairs showed polymorphism. Bulked segregant analysis (BSA) was conducted for the F1 population with respect to thrum style and pin style by scanning 28 polymorphic SSR primer combinations. One SSR marker, c64326, linked to the heterostyly trait at a genetic distance of ≈3.70 cM was identified. The marker c64326 was further validated in two populations with an accuracy of 97.92% and 90.63%. The novel and linked EST-SSR markers can be valuable resources for genetic diversity analysis, mapping, and marker-assisted breeding in P. forbesii.

Ephemeral parasitism on blooming diatoms in a temperate estuary

Parasites of phytoplankton influence phytoplankton bloom dynamics and may severely affect the type of food available for higher trophic levels. The incidence of parasitic infections generally is expected to increase across ecosystems worldwide under the scenario of global change. Herein we report on a massive parasite infection on two dominant diatoms of the austral winter bloom, namely Thalassiosira pacifica and Chaetoceros diadema, recorded during an extreme precipitation period in the Bahía Blanca Estuary, Argentina. The parasite infection was concomitant with a marked drop in water salinity and affected more than 40% of host cells. Although the parasite on C. diadema was not identified, the parasite on T. pacifica was most likely Pirsonia sp., a nanoflagellate with high host specificity. After the intense rainy period and the parasitic infection, the phytoplankton biomass dropped (by more than 80%) and the community structure shifted to one with smaller species (i.e. Thalassiosira curviseriata, T. hibernalis and T. minima). We discuss the implications that these modifications may have on the food web dynamics and the potential relationship between precipitation-driven modifications in water properties and the emergence of parasitism in coastal eutrophic environments.